Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026674.1-P | Field mustard | nucleus | 64.47 | 71.36 |
| CDY21751 | Canola | nucleus | 64.04 | 70.87 |
| CDX81816 | Canola | nucleus | 63.16 | 69.9 |
| AT1G72350.1 | Thale cress | nucleus | 52.19 | 53.12 |
| Os12t0407000-00 | Rice | mitochondrion | 28.07 | 32.99 |
| GSMUA_Achr4P11900_001 | Banana | nucleus | 21.05 | 32.88 |
| Os06t0504100-00 | Rice | mitochondrion | 26.75 | 29.05 |
| TraesCS1B01G080200.1 | Wheat | nucleus | 22.37 | 28.65 |
| TraesCS5B01G471900.1 | Wheat | mitochondrion | 21.49 | 28.32 |
| TraesCS1D01G062500.1 | Wheat | nucleus | 21.93 | 27.62 |
| TraesCS5D01G474300.1 | Wheat | mitochondrion, nucleus, plastid | 20.61 | 27.17 |
| Zm00001d007891_P001 | Maize | nucleus | 22.81 | 27.08 |
| TraesCS7D01G337200.1 | Wheat | plastid | 22.81 | 26.94 |
| Zm00001d042550_P001 | Maize | nucleus | 21.93 | 26.6 |
| TraesCS7B01G240500.1 | Wheat | plastid | 22.37 | 26.42 |
| TraesCS7A01G342300.1 | Wheat | plastid | 22.81 | 26.4 |
| HORVU7Hr1G081190.1 | Barley | nucleus | 17.11 | 26.0 |
| TraesCS1A01G013100.1 | Wheat | nucleus | 21.49 | 25.93 |
| TraesCS7A01G342600.1 | Wheat | nucleus, plastid | 22.37 | 25.89 |
| HORVU5Hr1G110410.2 | Barley | nucleus | 21.93 | 25.77 |
| KXG21744 | Sorghum | nucleus | 22.37 | 25.63 |
| KXG20143 | Sorghum | nucleus | 20.61 | 25.54 |
| TraesCS7D01G337000.1 | Wheat | plastid | 21.93 | 25.51 |
| TraesCS7B01G211300.1 | Wheat | plastid | 21.93 | 25.51 |
| TraesCS7B01G240400.1 | Wheat | plastid | 21.49 | 25.0 |
| VIT_10s0003g03970.t01 | Wine grape | nucleus | 22.81 | 24.76 |
| EER88419 | Sorghum | nucleus | 23.25 | 24.65 |
| TraesCS1A01G061800.1 | Wheat | nucleus | 18.42 | 24.56 |
| VIT_07s0005g06590.t01 | Wine grape | nucleus | 22.37 | 24.29 |
| AT1G28460.1 | Thale cress | nucleus | 19.3 | 24.18 |
| PGSC0003DMT400002920 | Potato | nucleus | 17.98 | 23.3 |
| AT1G29962.1 | Thale cress | nucleus | 18.86 | 23.24 |
| EER89159 | Sorghum | nucleus | 22.81 | 22.71 |
| HORVU5Hr1G110470.1 | Barley | plastid | 24.56 | 22.58 |
| AT1G28450.1 | Thale cress | nucleus | 17.98 | 22.16 |
| Solyc11g069770.1.1 | Tomato | nucleus | 17.54 | 22.1 |
| AT2G24840.1 | Thale cress | nucleus | 25.44 | 21.97 |
| AT3G66656.1 | Thale cress | nucleus | 17.11 | 21.91 |
| Zm00001d046053_P001 | Maize | mitochondrion, plastid | 23.25 | 21.54 |
| Zm00001d046054_P001 | Maize | mitochondrion, plastid | 23.25 | 21.54 |
| HORVU7Hr1G081070.1 | Barley | mitochondrion, nucleus | 24.56 | 20.97 |
| AT2G34440.1 | Thale cress | nucleus | 15.79 | 20.93 |
| AT4G36590.1 | Thale cress | nucleus | 22.37 | 20.56 |
| AT1G65360.1 | Thale cress | nucleus | 20.18 | 20.35 |
| KRH47706 | Soybean | nucleus | 21.93 | 19.61 |
| AT1G01530.1 | Thale cress | nucleus | 20.18 | 18.62 |
| KRH06269 | Soybean | nucleus | 19.74 | 17.72 |
| AT1G54760.1 | Thale cress | nucleus | 12.28 | 17.39 |
| KRH47701 | Soybean | nucleus | 21.49 | 17.25 |
| KRH47704 | Soybean | nucleus | 21.49 | 17.07 |
| AT5G60440.1 | Thale cress | nucleus | 21.49 | 16.39 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:838303 | UniProt:A0A1P8AT79 | ProteinID:ANM59863.1 | ArrayExpress:AT1G17310 |
| EnsemblPlantsGene:AT1G17310 | RefSeq:AT1G17310 | TAIR:AT1G17310 | RefSeq:AT1G17310-TAIR-G | EnsemblPlants:AT1G17310.2 | GO:GO:0000982 |
| GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_001322190.1 |
| PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0008492645 | SEG:seg | : |
Description
MADS-box transcription factor family protein [Source:TAIR;Acc:AT1G17310]
Coordinates
chr1:-:5927925..5928833
Molecular Weight (calculated)
26152.7 Da
IEP (calculated)
9.788
GRAVY (calculated)
-0.672
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MIFSSLPSRL VMKDLFMEGE RETSSMTCLT PKDSVQSPNM LVRQPKKETT TQTPKTTRGR QKIEIKKIEE ETKRQVTFSK RRRGLFKKSA ELSVLTGAKI
101: AVITFSKCDR IYRFGHVDAL IDKYLRKSPV KLEGYSGDNA ADEESRRPWW ERPVESVPEE ELEEYMAALS MLRENIGKKI VAMGNDRTVD MVPAWPINVM
201: GWKPTMDMQK LENLTDGVNR CRVGQNGD
101: AVITFSKCDR IYRFGHVDAL IDKYLRKSPV KLEGYSGDNA ADEESRRPWW ERPVESVPEE ELEEYMAALS MLRENIGKKI VAMGNDRTVD MVPAWPINVM
201: GWKPTMDMQK LENLTDGVNR CRVGQNGD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.