Factsheet for PGSC0003DMT400085261

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400095852	Potato	cytosol	70.12	78.23
PGSC0003DMT400086589	Potato	mitochondrion	74.39	73.49
PGSC0003DMT400090556	Potato	mitochondrion, nucleus, plastid	74.39	73.05
PGSC0003DMT400091464	Potato	mitochondrion	78.05	72.73
PGSC0003DMT400094942	Potato	nucleus	54.88	68.7
PGSC0003DMT400085650	Potato	mitochondrion	68.29	66.67
PGSC0003DMT400091054	Potato	plastid	45.73	65.79
PGSC0003DMT400095668	Potato	mitochondrion	34.15	45.9
PGSC0003DMT400090264	Potato	mitochondrion	33.54	36.18
PGSC0003DMT400092448	Potato	plastid	48.78	35.56
PGSC0003DMT400097714	Potato	mitochondrion	31.71	34.67
PGSC0003DMT400097162	Potato	nucleus	32.93	32.73
VIT_01s0010g01530.t01	Wine grape	nucleus	37.8	31.96
PGSC0003DMT400086435	Potato	nucleus	20.12	31.43
PGSC0003DMT400086619	Potato	nucleus	31.1	27.42
PGSC0003DMT400088636	Potato	mitochondrion	19.51	27.35
PGSC0003DMT400013136	Potato	nucleus	32.32	26.9
PGSC0003DMT400094816	Potato	golgi, nucleus, plastid	35.98	26.7
PGSC0003DMT400016092	Potato	mitochondrion	31.71	26.4
PGSC0003DMT400094024	Potato	golgi, mitochondrion	28.05	25.14
PGSC0003DMT400086182	Potato	cytosol	19.51	25.0
PGSC0003DMT400092385	Potato	mitochondrion	29.27	24.37
PGSC0003DMT400097135	Potato	mitochondrion	28.05	24.34
PGSC0003DMT400094407	Potato	mitochondrion	31.1	24.17
PGSC0003DMT400090024	Potato	nucleus	25.0	23.98
PGSC0003DMT400094062	Potato	nucleus	28.66	23.04
PGSC0003DMT400095957	Potato	cytosol	17.68	22.48
PGSC0003DMT400092220	Potato	cytosol	17.07	21.88
PGSC0003DMT400091428	Potato	nucleus	22.56	21.51
PGSC0003DMT400093319	Potato	nucleus	23.17	21.35
PGSC0003DMT400095190	Potato	nucleus	23.17	21.11
PGSC0003DMT400000210	Potato	nucleus	18.29	20.98
PGSC0003DMT400093647	Potato	nucleus	18.29	20.83
PGSC0003DMT400090103	Potato	nucleus	22.56	20.79
PGSC0003DMT400093117	Potato	nucleus	22.56	20.56
PGSC0003DMT400094886	Potato	nucleus	21.95	20.0
PGSC0003DMT400091277	Potato	nucleus	21.95	20.0
PGSC0003DMT400090145	Potato	nucleus	18.29	19.87
PGSC0003DMT400089966	Potato	cytosol	20.12	19.41
PGSC0003DMT400088611	Potato	nucleus	18.9	18.79
PGSC0003DMT400095980	Potato	nucleus	19.51	18.5
PGSC0003DMT400013105	Potato	nucleus	22.56	17.37
PGSC0003DMT400090655	Potato	cytosol	18.29	17.24
GSMUA_Achr4P28260_001	Banana	nucleus	25.61	17.07
PGSC0003DMT400088968	Potato	nucleus	10.98	16.36
PGSC0003DMT400088010	Potato	cytosol	15.85	16.15
GSMUA_Achr5P01940_001	Banana	nucleus	23.78	15.98
PGSC0003DMT400002920	Potato	nucleus	17.07	15.91
PGSC0003DMT400097679	Potato	cytosol	12.2	15.62
PGSC0003DMT400089582	Potato	cytosol	15.24	15.53
PGSC0003DMT400094043	Potato	cytosol	14.02	15.44
PGSC0003DMT400063794	Potato	plastid	21.34	15.15
PGSC0003DMT400087813	Potato	nucleus	16.46	14.84
PGSC0003DMT400092871	Potato	nucleus	12.2	14.29
PGSC0003DMT400027289	Potato	cytosol	10.98	13.95
GSMUA_Achr5P01990_001	Banana	nucleus	24.39	11.53
PGSC0003DMT400097360	Potato	cytosol	9.15	11.36
PGSC0003DMT400095917	Potato	cytosol	9.15	11.36
PGSC0003DMT400086349	Potato	cytosol, mitochondrion	6.1	9.71

Protein Annotations

EntrezGene:107061925	MapMan:15.5.14	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M1D940	EnsemblPlantsGene:PGSC0003DMG400034832
PGSC:PGSC0003DMG400034832	EnsemblPlants:PGSC0003DMT400085261	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000295958D	RefSeq:XP_015167459.1	SEG:seg	:

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400034832]

Coordinates

chr4:-:28463661..28464235

Molecular Weight (calculated)

19061.1 Da

IEP (calculated)

11.208

GRAVY (calculated)

-0.720

Length

164 amino acids

Sequence
(BLAST)

001: MTTRTSKGRQ RVDMVKNKNA RNLQVTFSKR RAGVFSFGHP SVDTLVERFL GRNLPPPNND VHNQQIMARR EAGILELNTK IVNLEGVLQM EKNRGESLRE
101: IRKRANVLWW ESPMEELNLL QLQHLKKALK ILKQKVDKEA QMVNNNAFPY QTWRSAWTPP NCVS

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.