Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400089582 | Potato | cytosol | 95.65 | 95.65 |
| PGSC0003DMT400090655 | Potato | cytosol | 76.4 | 70.69 |
| PGSC0003DMT400091428 | Potato | nucleus | 45.34 | 42.44 |
| PGSC0003DMT400094886 | Potato | nucleus | 47.2 | 42.22 |
| PGSC0003DMT400093319 | Potato | nucleus | 46.58 | 42.13 |
| PGSC0003DMT400092871 | Potato | nucleus | 35.4 | 40.71 |
| PGSC0003DMT400093647 | Potato | nucleus | 36.02 | 40.28 |
| PGSC0003DMT400090103 | Potato | nucleus | 44.1 | 39.89 |
| PGSC0003DMT400091277 | Potato | nucleus | 44.1 | 39.44 |
| PGSC0003DMT400088611 | Potato | nucleus | 40.37 | 39.39 |
| PGSC0003DMT400095190 | Potato | nucleus | 43.48 | 38.89 |
| PGSC0003DMT400088968 | Potato | nucleus | 25.47 | 37.27 |
| PGSC0003DMT400093117 | Potato | nucleus | 41.61 | 37.22 |
| PGSC0003DMT400095980 | Potato | nucleus | 39.75 | 36.99 |
| PGSC0003DMT400087813 | Potato | nucleus | 40.99 | 36.26 |
| PGSC0003DMT400097679 | Potato | cytosol | 27.95 | 35.16 |
| PGSC0003DMT400027289 | Potato | cytosol | 27.95 | 34.88 |
| PGSC0003DMT400097360 | Potato | cytosol | 27.33 | 33.33 |
| PGSC0003DMT400095917 | Potato | cytosol | 26.71 | 32.58 |
| PGSC0003DMT400095957 | Potato | cytosol | 26.09 | 32.56 |
| PGSC0003DMT400094043 | Potato | cytosol | 29.19 | 31.54 |
| PGSC0003DMT400086349 | Potato | cytosol, mitochondrion | 19.88 | 31.07 |
| PGSC0003DMT400089966 | Potato | cytosol | 32.3 | 30.59 |
| PGSC0003DMT400094942 | Potato | nucleus | 19.88 | 24.43 |
| PGSC0003DMT400086589 | Potato | mitochondrion | 24.84 | 24.1 |
| PGSC0003DMT400095668 | Potato | mitochondrion | 18.01 | 23.77 |
| PGSC0003DMT400090264 | Potato | mitochondrion | 22.36 | 23.68 |
| PGSC0003DMT400097162 | Potato | nucleus | 22.98 | 22.42 |
| PGSC0003DMT400085650 | Potato | mitochondrion | 22.98 | 22.02 |
| PGSC0003DMT400091054 | Potato | plastid | 15.53 | 21.93 |
| PGSC0003DMT400013136 | Potato | nucleus | 26.71 | 21.83 |
| PGSC0003DMT400097714 | Potato | mitochondrion | 19.88 | 21.33 |
| PGSC0003DMT400091464 | Potato | mitochondrion | 22.98 | 21.02 |
| PGSC0003DMT400086435 | Potato | nucleus | 13.66 | 20.95 |
| PGSC0003DMT400094062 | Potato | nucleus | 26.09 | 20.59 |
| PGSC0003DMT400094816 | Potato | golgi, nucleus, plastid | 27.33 | 19.91 |
| PGSC0003DMT400086619 | Potato | nucleus | 21.74 | 18.82 |
| PGSC0003DMT400088636 | Potato | mitochondrion | 13.66 | 18.8 |
| PGSC0003DMT400090556 | Potato | mitochondrion, nucleus, plastid | 19.25 | 18.56 |
| PGSC0003DMT400095852 | Potato | cytosol | 16.77 | 18.37 |
| PGSC0003DMT400000210 | Potato | nucleus | 16.15 | 18.18 |
| PGSC0003DMT400090024 | Potato | nucleus | 19.25 | 18.13 |
| PGSC0003DMT400097135 | Potato | mitochondrion | 21.12 | 17.99 |
| PGSC0003DMT400016092 | Potato | mitochondrion | 20.5 | 16.75 |
| PGSC0003DMT400085261 | Potato | nucleus | 16.15 | 15.85 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 24.22 | 15.85 |
| PGSC0003DMT400094407 | Potato | mitochondrion | 20.5 | 15.64 |
| PGSC0003DMT400002920 | Potato | nucleus | 16.77 | 15.34 |
| PGSC0003DMT400092220 | Potato | cytosol | 11.8 | 14.84 |
| AT1G28460.1 | Thale cress | nucleus | 16.77 | 14.84 |
| PGSC0003DMT400092385 | Potato | mitochondrion | 18.01 | 14.72 |
| PGSC0003DMT400094024 | Potato | golgi, mitochondrion | 16.15 | 14.21 |
| PGSC0003DMT400086182 | Potato | cytosol | 11.18 | 14.06 |
| PGSC0003DMT400092448 | Potato | plastid | 19.25 | 13.78 |
| PGSC0003DMT400013105 | Potato | nucleus | 18.01 | 13.62 |
| AT1G28450.1 | Thale cress | nucleus | 15.53 | 13.51 |
| PGSC0003DMT400063794 | Potato | plastid | 19.25 | 13.42 |
| CDY26304 | Canola | nucleus | 14.91 | 12.97 |
| Bra032347.1-P | Field mustard | nucleus | 14.91 | 12.9 |
| PGSC0003DMT400090145 | Potato | nucleus | 11.8 | 12.58 |
| AT1G29962.1 | Thale cress | nucleus | 14.29 | 12.43 |
| AT1G54760.1 | Thale cress | nucleus | 12.42 | 12.42 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 18.01 | 11.89 |
| CDX99867 | Canola | nucleus | 14.29 | 11.86 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 22.36 | 10.37 |
Protein Annotations
| MapMan:15.5.14 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M1DF22 | PFAM:PF00319 | EnsemblPlantsGene:PGSC0003DMG400037581 | PGSC:PGSC0003DMG400037581 |
| EnsemblPlants:PGSC0003DMT400088010 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI000294E2F4 | : | : | : | : |
Description
Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400037581]
Coordinates
chr4:+:54575543..54576028
Molecular Weight (calculated)
18484.9 Da
IEP (calculated)
4.527
GRAVY (calculated)
-0.446
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKIENEAAR YASFLEHRLS LYKLAGDLVQ QHDVDIGIVL SSPTNKPCSF FHPTVDVVSQ RLMNPNVELG DTTKLVATCV RNNVNEIEYK LAELKIREDV
101: ASKQSVILDQ AKEMREIDWW EDVEKLKTDE VTQFEAWLDV ADFNMKNRLK QLENEVASNA S
101: ASKQSVILDQ AKEMREIDWW EDVEKLKTDE VTQFEAWLDV ADFNMKNRLK QLENEVASNA S
001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
Arabidopsis Description
MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.