Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400097679 | Potato | cytosol | 82.17 | 82.81 |
| PGSC0003DMT400093117 | Potato | nucleus | 86.05 | 61.67 |
| PGSC0003DMT400095190 | Potato | nucleus | 86.05 | 61.67 |
| Solyc04g056740.1.1 | Tomato | nucleus | 82.17 | 58.89 |
| PGSC0003DMT400091277 | Potato | nucleus | 60.47 | 43.33 |
| PGSC0003DMT400094886 | Potato | nucleus | 59.69 | 42.78 |
| PGSC0003DMT400090103 | Potato | nucleus | 57.36 | 41.57 |
| PGSC0003DMT400093319 | Potato | nucleus | 56.59 | 41.01 |
| PGSC0003DMT400091428 | Potato | nucleus | 51.16 | 38.37 |
| PGSC0003DMT400095917 | Potato | cytosol | 38.76 | 37.88 |
| PGSC0003DMT400097360 | Potato | cytosol | 37.98 | 37.12 |
| PGSC0003DMT400088968 | Potato | nucleus | 30.23 | 35.45 |
| PGSC0003DMT400086349 | Potato | cytosol, mitochondrion | 27.13 | 33.98 |
| PGSC0003DMT400095980 | Potato | nucleus | 42.64 | 31.79 |
| PGSC0003DMT400087813 | Potato | nucleus | 41.09 | 29.12 |
| PGSC0003DMT400089582 | Potato | cytosol | 34.88 | 27.95 |
| PGSC0003DMT400088010 | Potato | cytosol | 34.88 | 27.95 |
| PGSC0003DMT400090655 | Potato | cytosol | 37.21 | 27.59 |
| PGSC0003DMT400093647 | Potato | nucleus | 30.23 | 27.08 |
| PGSC0003DMT400088611 | Potato | nucleus | 34.11 | 26.67 |
| PGSC0003DMT400092871 | Potato | nucleus | 25.58 | 23.57 |
| PGSC0003DMT400094043 | Potato | cytosol | 22.48 | 19.46 |
| PGSC0003DMT400089966 | Potato | cytosol | 23.26 | 17.65 |
| PGSC0003DMT400095957 | Potato | cytosol | 16.28 | 16.28 |
| PGSC0003DMT400095852 | Potato | cytosol | 17.83 | 15.65 |
| PGSC0003DMT400086589 | Potato | mitochondrion | 18.6 | 14.46 |
| PGSC0003DMT400094062 | Potato | nucleus | 22.48 | 14.22 |
| PGSC0003DMT400094816 | Potato | golgi, nucleus, plastid | 22.48 | 13.12 |
| PGSC0003DMT400094942 | Potato | nucleus | 13.18 | 12.98 |
| PGSC0003DMT400090556 | Potato | mitochondrion, nucleus, plastid | 16.28 | 12.57 |
| PGSC0003DMT400013136 | Potato | nucleus | 18.6 | 12.18 |
| PGSC0003DMT400091464 | Potato | mitochondrion | 16.28 | 11.93 |
| AT1G54760.1 | Thale cress | nucleus | 14.73 | 11.8 |
| PGSC0003DMT400094024 | Potato | golgi, mitochondrion | 16.28 | 11.48 |
| PGSC0003DMT400091054 | Potato | plastid | 10.08 | 11.4 |
| PGSC0003DMT400097714 | Potato | mitochondrion | 13.18 | 11.33 |
| PGSC0003DMT400090264 | Potato | mitochondrion | 13.18 | 11.18 |
| PGSC0003DMT400085261 | Potato | nucleus | 13.95 | 10.98 |
| PGSC0003DMT400095668 | Potato | mitochondrion | 10.08 | 10.66 |
| PGSC0003DMT400090024 | Potato | nucleus | 13.95 | 10.53 |
| PGSC0003DMT400097162 | Potato | nucleus | 13.18 | 10.3 |
| PGSC0003DMT400085650 | Potato | mitochondrion | 13.18 | 10.12 |
| AT1G28460.1 | Thale cress | nucleus | 13.95 | 9.89 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 18.6 | 9.84 |
| PGSC0003DMT400092448 | Potato | plastid | 17.05 | 9.78 |
| AT1G29962.1 | Thale cress | nucleus | 13.95 | 9.73 |
| AT1G28450.1 | Thale cress | nucleus | 13.95 | 9.73 |
| PGSC0003DMT400002920 | Potato | nucleus | 13.18 | 9.66 |
| PGSC0003DMT400063794 | Potato | plastid | 17.05 | 9.52 |
| PGSC0003DMT400086435 | Potato | nucleus | 7.75 | 9.52 |
| PGSC0003DMT400097135 | Potato | mitochondrion | 13.95 | 9.52 |
| PGSC0003DMT400088636 | Potato | mitochondrion | 8.53 | 9.4 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 17.83 | 9.35 |
| PGSC0003DMT400016092 | Potato | mitochondrion | 13.95 | 9.14 |
| PGSC0003DMT400000210 | Potato | nucleus | 10.08 | 9.09 |
| CDX99867 | Canola | nucleus | 13.18 | 8.76 |
| CDY26304 | Canola | nucleus | 12.4 | 8.65 |
| PGSC0003DMT400086619 | Potato | nucleus | 12.4 | 8.6 |
| Bra032347.1-P | Field mustard | nucleus | 11.63 | 8.06 |
| PGSC0003DMT400013105 | Potato | nucleus | 13.18 | 7.98 |
| PGSC0003DMT400092385 | Potato | mitochondrion | 11.63 | 7.61 |
| PGSC0003DMT400094407 | Potato | mitochondrion | 12.4 | 7.58 |
| PGSC0003DMT400092220 | Potato | cytosol | 6.98 | 7.03 |
| PGSC0003DMT400086182 | Potato | cytosol | 6.2 | 6.25 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 15.5 | 5.76 |
| PGSC0003DMT400090145 | Potato | nucleus | 6.2 | 5.3 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400027289 | EnsemblPlantsGene:PGSC0003DMG400010524 | PGSC:PGSC0003DMG400010524 | UniParc:UPI000294CCD9 | UniProt:M1APG6 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010524]
Coordinates
chr4:-:49378417..49378806
Molecular Weight (calculated)
14556.2 Da
IEP (calculated)
5.987
GRAVY (calculated)
-0.490
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MMVSPAGKPQ SFFHPTVNAI VSHFQNPDMQ KSQGIRLDTI IAGNKVNQLK NRLEELDAVE DARIARTTFY DQMAEVGQKG WWESIEQLNA HEVTIFEAWL
101: SDTCSKMRHH LNQLENGAPS SLGRESFGV
101: SDTCSKMRHH LNQLENGAPS SLGRESFGV
001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
Arabidopsis Description
MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.