Factsheet for PGSC0003DMT400089966

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400095957	Potato	cytosol	62.94	82.95
PGSC0003DMT400088611	Potato	nucleus	52.94	54.55
PGSC0003DMT400093647	Potato	nucleus	45.29	53.47
PGSC0003DMT400094043	Potato	cytosol	45.29	51.68
PGSC0003DMT400091428	Potato	nucleus	41.18	40.7
PGSC0003DMT400095980	Potato	nucleus	37.65	36.99
PGSC0003DMT400088968	Potato	nucleus	23.53	36.36
PGSC0003DMT400093319	Potato	nucleus	37.65	35.96
PGSC0003DMT400093117	Potato	nucleus	37.65	35.56
PGSC0003DMT400095190	Potato	nucleus	37.65	35.56
PGSC0003DMT400087813	Potato	nucleus	37.65	35.16
PGSC0003DMT400092871	Potato	nucleus	28.82	35.0
PGSC0003DMT400090655	Potato	cytosol	35.29	34.48
PGSC0003DMT400091277	Potato	nucleus	36.47	34.44
PGSC0003DMT400090103	Potato	nucleus	35.29	33.71
PGSC0003DMT400094886	Potato	nucleus	34.71	32.78
PGSC0003DMT400088010	Potato	cytosol	30.59	32.3
PGSC0003DMT400089582	Potato	cytosol	30.0	31.68
PGSC0003DMT400091054	Potato	plastid	19.41	28.95
PGSC0003DMT400095668	Potato	mitochondrion	20.0	27.87
PGSC0003DMT400097360	Potato	cytosol	21.18	27.27
PGSC0003DMT400095917	Potato	cytosol	20.59	26.52
PGSC0003DMT400094942	Potato	nucleus	20.0	25.95
PGSC0003DMT400097679	Potato	cytosol	19.41	25.78
PGSC0003DMT400086435	Potato	nucleus	15.88	25.71
PGSC0003DMT400090264	Potato	mitochondrion	22.94	25.66
PGSC0003DMT400086589	Potato	mitochondrion	24.12	24.7
PGSC0003DMT400097162	Potato	nucleus	23.53	24.24
PGSC0003DMT400097714	Potato	mitochondrion	21.18	24.0
PGSC0003DMT400090556	Potato	mitochondrion, nucleus, plastid	23.53	23.95
PGSC0003DMT400085650	Potato	mitochondrion	23.53	23.81
PGSC0003DMT400086349	Potato	cytosol, mitochondrion	14.12	23.3
PGSC0003DMT400027289	Potato	cytosol	17.65	23.26
PGSC0003DMT400091464	Potato	mitochondrion	23.53	22.73
PGSC0003DMT400094062	Potato	nucleus	27.06	22.55
PGSC0003DMT400094816	Potato	golgi, nucleus, plastid	28.82	22.17
CDX99867	Canola	nucleus	25.29	22.16
PGSC0003DMT400016092	Potato	mitochondrion	25.29	21.83
PGSC0003DMT400013136	Potato	nucleus	25.29	21.83
PGSC0003DMT400090024	Potato	nucleus	21.76	21.64
CDY26304	Canola	nucleus	23.53	21.62
PGSC0003DMT400088636	Potato	mitochondrion	14.71	21.37
Bra032347.1-P	Field mustard	nucleus	22.94	20.97
AT1G28460.1	Thale cress	nucleus	22.35	20.88
AT1G29962.1	Thale cress	nucleus	22.35	20.54
PGSC0003DMT400085261	Potato	nucleus	19.41	20.12
PGSC0003DMT400086619	Potato	nucleus	21.76	19.89
PGSC0003DMT400013105	Potato	nucleus	24.71	19.72
PGSC0003DMT400000210	Potato	nucleus	16.47	19.58
AT1G28450.1	Thale cress	nucleus	21.18	19.46
PGSC0003DMT400002920	Potato	nucleus	20.0	19.32
PGSC0003DMT400092385	Potato	mitochondrion	22.35	19.29
GSMUA_Achr5P01940_001	Banana	nucleus	27.65	19.26
PGSC0003DMT400063794	Potato	plastid	25.88	19.05
PGSC0003DMT400097135	Potato	mitochondrion	21.18	19.05
PGSC0003DMT400094024	Potato	golgi, mitochondrion	20.0	18.58
GSMUA_Achr4P28260_001	Banana	nucleus	25.88	17.89
PGSC0003DMT400094407	Potato	mitochondrion	21.18	17.06
PGSC0003DMT400095852	Potato	cytosol	14.71	17.01
AT1G54760.1	Thale cress	nucleus	15.29	16.15
PGSC0003DMT400092448	Potato	plastid	21.18	16.0
PGSC0003DMT400086182	Potato	cytosol	10.0	13.28
GSMUA_Achr5P01990_001	Banana	nucleus	25.88	12.68
PGSC0003DMT400092220	Potato	cytosol	8.82	11.72
PGSC0003DMT400090145	Potato	nucleus	8.82	9.93

Protein Annotations

EntrezGene:107061876	MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000982	GO:GO:0000987
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M1DJA7	InterPro:MADS_SRF-like	PFAM:PF00319
EnsemblPlantsGene:PGSC0003DMG400039537	PGSC:PGSC0003DMG400039537	EnsemblPlants:PGSC0003DMT400089966	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002958F21
RefSeq:XP_015167292.1	:	:	:	:	:

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400039537]

Coordinates

chr9:-:4843300..4843812

Molecular Weight (calculated)

19697.2 Da

IEP (calculated)

4.662

GRAVY (calculated)

-0.729

Length

170 amino acids

Sequence
(BLAST)

001: MAEKKTLGRQ KISMAKIENE DDLYSSFSKR RETLYKKASD MIRKYDIDVG IVTFSPSDNP FSFFHPTIDA VVDRFFSPYT QGSETSRLNI ANTRTRIKEK
101: QVELEDLEII KETLANQTTD ETDIEEMWKQ IKEFNPEDLK KFESRLDEVD LMLKNVVASS IAQAPQENAN

Best Arabidopsis Sequence Match ( AT1G01530.1 )
(BLAST)

001: MARKNLGRRK IELVKMTNES NLQVTFSKRR SGLFKKGSEL CTLCDAEIAI IVFSPSGKAY SFGHPNVNKL LDHSLGRVIR HNNTNFAESR TKLRIQMLNE
101: SLTEVMAEKE KEQETKQSIV QNERENKDAE KWWRNSPTEL NLAQSTSMKC DLEALKKEVD EKVAQLHHRN LNFYVGSSSN VAAPAAVSGG NISTNHGFFD
201: QNGNSTSAPT LPFGFNVMNR TPAGYNSYQL QNQEVKQVHP QYWARYY

Arabidopsis Description

AGL28AGL28 [Source:UniProtKB/TrEMBL;Acc:A0A178WE04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.