Factsheet for PGSC0003DMT400097360

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400095917	Potato	cytosol	93.94	93.94
Solyc10g018110.1.1	Tomato	nucleus	85.61	61.41
Solyc10g018080.1.1	Tomato	cytosol	59.85	52.32
Solyc10g018070.1.1	Tomato	nucleus	43.94	48.74
PGSC0003DMT400086349	Potato	cytosol, mitochondrion	32.58	41.75
PGSC0003DMT400027289	Potato	cytosol	37.12	37.98
PGSC0003DMT400087813	Potato	nucleus	52.27	37.91
PGSC0003DMT400097679	Potato	cytosol	32.58	33.59
PGSC0003DMT400092871	Potato	nucleus	33.33	31.43
PGSC0003DMT400091277	Potato	nucleus	40.91	30.0
PGSC0003DMT400094886	Potato	nucleus	40.91	30.0
PGSC0003DMT400091428	Potato	nucleus	37.88	29.07
PGSC0003DMT400095190	Potato	nucleus	39.39	28.89
PGSC0003DMT400093319	Potato	nucleus	37.88	28.09
PGSC0003DMT400093117	Potato	nucleus	37.88	27.78
PGSC0003DMT400088010	Potato	cytosol	33.33	27.33
PGSC0003DMT400089582	Potato	cytosol	33.33	27.33
PGSC0003DMT400088611	Potato	nucleus	34.09	27.27
PGSC0003DMT400090103	Potato	nucleus	35.61	26.4
PGSC0003DMT400090655	Potato	cytosol	32.58	24.71
PGSC0003DMT400095980	Potato	nucleus	31.06	23.7
PGSC0003DMT400088968	Potato	nucleus	19.7	23.64
PGSC0003DMT400093647	Potato	nucleus	25.76	23.61
PGSC0003DMT400089966	Potato	cytosol	27.27	21.18
PGSC0003DMT400094043	Potato	cytosol	23.48	20.81
PGSC0003DMT400095957	Potato	cytosol	15.91	16.28
AT1G54760.1	Thale cress	nucleus	18.94	15.53
AT1G29962.1	Thale cress	nucleus	19.7	14.05
PGSC0003DMT400094062	Potato	nucleus	21.21	13.73
CDX99867	Canola	nucleus	19.7	13.4
PGSC0003DMT400097714	Potato	mitochondrion	15.15	13.33
PGSC0003DMT400013136	Potato	nucleus	19.7	13.2
AT1G28450.1	Thale cress	nucleus	18.18	12.97
PGSC0003DMT400095852	Potato	cytosol	14.39	12.93
PGSC0003DMT400097162	Potato	nucleus	15.91	12.73
AT1G28460.1	Thale cress	nucleus	17.42	12.64
PGSC0003DMT400090264	Potato	mitochondrion	14.39	12.5
PGSC0003DMT400094816	Potato	golgi, nucleus, plastid	20.45	12.22
PGSC0003DMT400094942	Potato	nucleus	12.12	12.21
PGSC0003DMT400063794	Potato	plastid	21.21	12.12
PGSC0003DMT400086589	Potato	mitochondrion	15.15	12.05
PGSC0003DMT400095668	Potato	mitochondrion	10.61	11.48
PGSC0003DMT400090556	Potato	mitochondrion, nucleus, plastid	14.39	11.38
PGSC0003DMT400002920	Potato	nucleus	15.15	11.36
CDY26304	Canola	nucleus	15.91	11.35
PGSC0003DMT400091464	Potato	mitochondrion	14.39	10.8
PGSC0003DMT400085650	Potato	mitochondrion	13.64	10.71
PGSC0003DMT400092448	Potato	plastid	18.18	10.67
GSMUA_Achr5P01940_001	Banana	nucleus	19.7	10.66
Bra032347.1-P	Field mustard	nucleus	14.39	10.22
PGSC0003DMT400086619	Potato	nucleus	14.39	10.22
GSMUA_Achr4P28260_001	Banana	nucleus	18.94	10.16
PGSC0003DMT400086182	Potato	cytosol	9.85	10.16
PGSC0003DMT400090024	Potato	nucleus	12.88	9.94
PGSC0003DMT400091054	Potato	plastid	8.33	9.65
PGSC0003DMT400086435	Potato	nucleus	7.58	9.52
PGSC0003DMT400013105	Potato	nucleus	15.15	9.39
PGSC0003DMT400092220	Potato	cytosol	9.09	9.38
PGSC0003DMT400094024	Potato	golgi, mitochondrion	12.88	9.29
PGSC0003DMT400090145	Potato	nucleus	10.61	9.27
PGSC0003DMT400085261	Potato	nucleus	11.36	9.15
PGSC0003DMT400094407	Potato	mitochondrion	14.39	9.0
PGSC0003DMT400000210	Potato	nucleus	9.09	8.39
PGSC0003DMT400016092	Potato	mitochondrion	12.12	8.12
PGSC0003DMT400097135	Potato	mitochondrion	11.36	7.94
GSMUA_Achr5P01990_001	Banana	nucleus	20.45	7.78
PGSC0003DMT400088636	Potato	mitochondrion	6.82	7.69
PGSC0003DMT400092385	Potato	mitochondrion	10.61	7.11

Protein Annotations

EnsemblPlants:PGSC0003DMT400097360	EnsemblPlantsGene:PGSC0003DMG400046931	ncoils:Coil	PGSC:PGSC0003DMG400046931	UniParc:UPI000295A530	UniProt:M1E0G3
MapMan:35.2	:	:	:	:	:

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400046931]

Coordinates

chr10:+:39478870..39479268

Molecular Weight (calculated)

15150.6 Da

IEP (calculated)

4.303

GRAVY (calculated)

-0.519

Length

132 amino acids

Sequence
(BLAST)

001: MFSPKGIPYS FISPTSNVVI DRFINPTTKL NTSDRLVAVE ERKIVSQFND ILNELDEREK IANEKLDRMN EARDIGWWES IDRFSVHDTM KFEAWLISGE
101: FNLNEHLEQL ENGASSSSQI PSDDANISPN VF

Best Arabidopsis Sequence Match ( AT4G36590.1 )
(BLAST)

001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS

Arabidopsis Description

MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.