Factsheet for PGSC0003DMT400097135

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016092	Potato	mitochondrion	75.66	72.59
PGSC0003DMT400092385	Potato	mitochondrion	74.07	71.07
PGSC0003DMT400090264	Potato	mitochondrion	51.32	63.82
PGSC0003DMT400097162	Potato	nucleus	55.03	63.03
PGSC0003DMT400094024	Potato	golgi, mitochondrion	56.08	57.92
PGSC0003DMT400094407	Potato	mitochondrion	64.55	57.82
PGSC0003DMT400086182	Potato	cytosol	38.62	57.03
PGSC0003DMT400086619	Potato	nucleus	56.08	56.99
PGSC0003DMT400092220	Potato	cytosol	37.04	54.69
PGSC0003DMT400097714	Potato	mitochondrion	43.39	54.67
PGSC0003DMT400088636	Potato	mitochondrion	31.75	51.28
PGSC0003DMT400090145	Potato	nucleus	39.15	49.01
Solyc01g060310.1.1	Tomato	nucleus, plastid	35.45	48.2
PGSC0003DMT400091054	Potato	plastid	24.87	41.23
PGSC0003DMT400095668	Potato	mitochondrion	24.34	37.7
PGSC0003DMT400094942	Potato	nucleus	25.93	37.4
PGSC0003DMT400086589	Potato	mitochondrion	32.28	36.75
PGSC0003DMT400085650	Potato	mitochondrion	31.75	35.71
PGSC0003DMT400091464	Potato	mitochondrion	32.8	35.23
PGSC0003DMT400090556	Potato	mitochondrion, nucleus, plastid	30.69	34.73
Solyc01g060300.1.1	Tomato	nucleus	38.1	34.12
AT3G66656.1	Thale cress	nucleus	29.63	31.46
PGSC0003DMT400086435	Potato	nucleus	17.46	31.43
PGSC0003DMT400094062	Potato	nucleus	33.33	30.88
KRH60217	Soybean	nucleus	28.57	30.51
KRH41505	Soybean	cytosol, nucleus, plastid	25.93	30.43
PGSC0003DMT400013136	Potato	nucleus	31.22	29.95
KRH60216	Soybean	nucleus	29.1	29.73
KRG99424	Soybean	nucleus	28.57	29.67
Bra021910.1-P	Field mustard	nucleus	28.04	29.12
Bra001209.1-P	Field mustard	nucleus	27.51	29.05
CDY57614	Canola	nucleus	27.51	29.05
CDX74094	Canola	nucleus	27.51	29.05
PGSC0003DMT400002920	Potato	nucleus	26.45	28.41
PGSC0003DMT400085261	Potato	nucleus	24.34	28.05
KRH45604	Soybean	nucleus	28.04	28.04
AT2G34440.1	Thale cress	nucleus	25.4	27.91
PGSC0003DMT400095852	Potato	cytosol	21.69	27.89
PGSC0003DMT400094816	Potato	golgi, nucleus, plastid	32.28	27.6
KRH41503	Soybean	nucleus	23.28	27.5
PGSC0003DMT400090024	Potato	nucleus	24.87	27.49
PGSC0003DMT400088968	Potato	nucleus	15.34	26.36
VIT_00s0386g00010.t01	Wine grape	nucleus	27.51	25.62
PGSC0003DMT400000210	Potato	nucleus	18.52	24.48
PGSC0003DMT400093647	Potato	nucleus	18.52	24.31
PGSC0003DMT400095980	Potato	nucleus	21.69	23.7
PGSC0003DMT400013105	Potato	nucleus	26.45	23.47
PGSC0003DMT400093117	Potato	nucleus	22.22	23.33
PGSC0003DMT400095190	Potato	nucleus	22.22	23.33
PGSC0003DMT400095957	Potato	cytosol	15.34	22.48
PGSC0003DMT400093319	Potato	nucleus	21.16	22.47
PGSC0003DMT400088611	Potato	nucleus	19.58	22.42
PGSC0003DMT400090655	Potato	cytosol	20.63	22.41
PGSC0003DMT400089582	Potato	cytosol	19.05	22.36
PGSC0003DMT400094886	Potato	nucleus	21.16	22.22
PGSC0003DMT400090103	Potato	nucleus	20.63	21.91
PGSC0003DMT400091277	Potato	nucleus	20.63	21.67
GSMUA_Achr5P01940_001	Banana	nucleus	27.51	21.31
PGSC0003DMT400063794	Potato	plastid	25.93	21.21
PGSC0003DMT400089966	Potato	cytosol	19.05	21.18
PGSC0003DMT400088010	Potato	cytosol	17.99	21.12
GSMUA_Achr4P28260_001	Banana	nucleus	26.98	20.73
PGSC0003DMT400092448	Potato	plastid	23.81	20.0
PGSC0003DMT400092871	Potato	nucleus	14.81	20.0
PGSC0003DMT400091428	Potato	nucleus	17.46	19.19
PGSC0003DMT400087813	Potato	nucleus	17.46	18.13
PGSC0003DMT400094043	Potato	cytosol	14.29	18.12
GSMUA_Achr5P01990_001	Banana	nucleus	28.57	15.56
PGSC0003DMT400097679	Potato	cytosol	10.05	14.84
PGSC0003DMT400027289	Potato	cytosol	9.52	13.95
PGSC0003DMT400095917	Potato	cytosol	8.47	12.12
PGSC0003DMT400097360	Potato	cytosol	7.94	11.36
PGSC0003DMT400086349	Potato	cytosol, mitochondrion	4.76	8.74

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M1DZZ9	PFAM:PF00319
EnsemblPlantsGene:PGSC0003DMG400046706	PGSC:PGSC0003DMG400046706	EnsemblPlants:PGSC0003DMT400097135	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000295D959

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400046706]

Coordinates

chr1:-:60293060..60293646

Molecular Weight (calculated)

21157.1 Da

IEP (calculated)

8.945

GRAVY (calculated)

-0.623

Length

189 amino acids

Sequence
(BLAST)

001: MRRPNGSRRI QIVRMQNQTS KQVTFSKRRA GLFKKASELS TLCGADVAIV VYSPSNKVYA CGHPSVESIV QKFLRENPTP GTNDPNAKCN EINRKLNMLE
101: RQLEKERKHG QALQALRTEP SHEKLSFSDL KSLCEALEAA DEEVERVASQ LLEANKVFPY QTIGSAFAPL IVRESTSFDF NEGPSQSSE

Best Arabidopsis Sequence Match ( AT2G34440.1 )
(BLAST)

001: MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPFSYGKP NLDSVAERFM REYDDSDSGD EEKSGNYRPK LKRLSERLDL
101: LNQEVEAEKE RGEKSQEKLE SAGDERFKES IETLTLDELN EYKDRLQTVH GRIEGQVNHL QASSCLMLLS RK

Arabidopsis Description

AGL29AGL29 [Source:UniProtKB/TrEMBL;Acc:A0A178VU29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.