Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0116800-00 | Rice | mitochondrion | 72.12 | 71.43 |
| Os09t0402533-00 | Rice | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 19.71 | 67.21 |
| HORVU3Hr1G116800.1 | Barley | mitochondrion, nucleus, plastid | 54.81 | 62.98 |
| HORVU6Hr1G081660.1 | Barley | nucleus | 52.88 | 60.77 |
| EES19977 | Sorghum | nucleus | 59.62 | 50.61 |
| Zm00001d039080_P001 | Maize | nucleus | 58.65 | 49.39 |
| TraesCS3B01G608600.1 | Wheat | mitochondrion | 61.54 | 49.23 |
| Zm00001d009628_P001 | Maize | nucleus | 58.65 | 49.19 |
| TraesCS3A01G535200.1 | Wheat | nucleus | 60.58 | 48.46 |
| TraesCS3D01G540700.1 | Wheat | mitochondrion, nucleus, plastid | 59.62 | 48.06 |
| TraesCS6B01G369100.1 | Wheat | nucleus | 57.69 | 46.69 |
| TraesCS6A01G338400.1 | Wheat | nucleus | 55.77 | 46.22 |
| TraesCS6B01G369000.1 | Wheat | nucleus | 56.25 | 45.7 |
| TraesCS6D01G319100.1 | Wheat | nucleus | 56.25 | 45.35 |
| TraesCS3B01G612700.1 | Wheat | nucleus | 36.06 | 38.66 |
| TraesCS3B01G612300.1 | Wheat | nucleus | 31.73 | 38.15 |
| TraesCSU01G235300.1 | Wheat | nucleus | 35.58 | 38.14 |
| Os12t0407000-00 | Rice | mitochondrion | 33.17 | 35.57 |
| Os06t0504100-00 | Rice | mitochondrion | 35.1 | 34.76 |
| GSMUA_Achr8P07230_001 | Banana | nucleus | 39.42 | 34.75 |
| GSMUA_Achr5P26530_001 | Banana | mitochondrion, nucleus, plastid | 35.58 | 32.89 |
| TraesCS3B01G612800.1 | Wheat | nucleus | 40.38 | 29.58 |
| TraesCS3B01G612900.1 | Wheat | nucleus | 40.38 | 29.58 |
| TraesCS3D01G532900.1 | Wheat | nucleus | 35.1 | 29.08 |
| TraesCS5B01G008000.1 | Wheat | nucleus | 35.58 | 29.02 |
| TraesCS3D01G513800.1 | Wheat | nucleus, plastid | 37.02 | 27.4 |
| TraesCS3B01G612500.1 | Wheat | nucleus | 41.35 | 27.04 |
| TraesCS1D01G310700.1 | Wheat | nucleus | 38.46 | 25.81 |
| TraesCS1B01G322300.1 | Wheat | nucleus | 38.46 | 25.48 |
| TraesCS3B01G612600.1 | Wheat | nucleus | 39.9 | 25.3 |
| TraesCS3B01G612400.1 | Wheat | nucleus | 40.38 | 25.15 |
| TraesCS3A01G359300.1 | Wheat | nucleus | 39.42 | 24.92 |
| TraesCS3D01G446900.1 | Wheat | nucleus | 38.94 | 24.55 |
| HORVU3Hr1G086260.1 | Barley | nucleus | 38.46 | 23.88 |
| TraesCS3B01G493100.1 | Wheat | nucleus | 37.98 | 22.57 |
| TraesCS3B01G595700.1 | Wheat | nucleus | 40.87 | 21.96 |
| TraesCS5A01G010400.1 | Wheat | nucleus | 30.77 | 20.98 |
| TraesCS3A01G527400.1 | Wheat | nucleus | 37.98 | 19.8 |
| HORVU1Hr1G067950.1 | Barley | nucleus | 40.87 | 19.68 |
| TraesCS3A01G454500.1 | Wheat | nucleus | 25.96 | 17.31 |
| TraesCS3B01G608700.1 | Wheat | mitochondrion, plastid | 21.63 | 14.38 |
Protein Annotations
| EntrezGene:107275406 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:BAB63832.1 | ProteinID:BAS76465.1 | ncoils:Coil |
| ProteinID:EAZ15016.1 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | EnsemblPlantsGene:Os01g0975800 |
| EnsemblPlants:Os01t0975800-00 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF225 |
| UniProt:Q94CT0 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00000A3C79 |
| RefSeq:XP_015640475.1 | SEG:seg | : | : | : | : |
Description
MADS BOX GENE 79Similar to DNA binding protein. (Os01t0975800-00)
Coordinates
chr1:+:43112781..43113407
Molecular Weight (calculated)
22917.7 Da
IEP (calculated)
10.720
GRAVY (calculated)
-0.361
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMQVAAPSR RRPSLGRQKI EIRRIESEEA RQVCFSKRRA GFFKKASELS ILCSADVAAV VFSPAGKAYS FGHPSVECLL ERFLPDSSSG AAARVRRGAN
101: NNGGGGMVGE LNRQYGELRA MVEAHKARRE RADEKIEMER AAGRWLPMDA DVRRMSPEEL MAFGTGLMAV QAAVSARADQ MLRDALLIGR RPPTTTTAGF
201: GFFHMPHY
101: NNGGGGMVGE LNRQYGELRA MVEAHKARRE RADEKIEMER AAGRWLPMDA DVRRMSPEEL MAFGTGLMAV QAAVSARADQ MLRDALLIGR RPPTTTTAGF
201: GFFHMPHY
001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
Arabidopsis Description
AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.