Factsheet for TraesCS3D01G446900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G493100.1	Wheat	nucleus	92.12	86.86
TraesCS3A01G454500.1	Wheat	nucleus	80.61	85.26
HORVU3Hr1G086260.1	Barley	nucleus	63.94	62.99
TraesCS3D01G540700.1	Wheat	mitochondrion, nucleus, plastid	40.91	52.33
TraesCS3D01G513800.1	Wheat	nucleus, plastid	44.24	51.96
TraesCS6D01G319100.1	Wheat	nucleus	40.61	51.94
Zm00001d039080_P001	Maize	nucleus	31.82	42.51
Zm00001d009628_P001	Maize	nucleus	31.21	41.53
EES19977	Sorghum	nucleus	30.61	41.22
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	7.58	40.98
Os01t0975800-00	Rice	nucleus	24.55	38.94
Os09t0116800-00	Rice	mitochondrion	23.94	37.62
TraesCS3D01G532900.1	Wheat	nucleus	28.18	37.05
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	24.24	35.56
GSMUA_Achr8P07230_001	Banana	nucleus	24.24	33.9
TraesCS1D01G310700.1	Wheat	nucleus	30.3	32.26
TraesCS7D01G337200.1	Wheat	plastid	16.67	28.5
TraesCS1D01G062500.1	Wheat	nucleus	15.15	27.62
TraesCS5D01G474300.1	Wheat	mitochondrion, nucleus, plastid	14.24	27.17
TraesCS7D01G337000.1	Wheat	plastid	16.06	27.04

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS3D01G446900	EnsemblPlants:TraesCS3D01G446900.1
TIGR:cd00265	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:555532103..555533095

Molecular Weight (calculated)

35973.1 Da

IEP (calculated)

5.427

GRAVY (calculated)

-0.221

Length

330 amino acids

Sequence
(BLAST)

001: MAPKQKGGNG RQKIAIRRIE KESARQVCFS KRRQGLFIKA TEMAVMCGAE VAIVASSPGG KAFSFGHPSA EAVIDRFLSG GGAGVLSVAN DNELKKLHLQ
101: HGELRMLLKE VKERKECVEE AMAKERAAGD QIAMWLNPKL CDMGEEEMIA FAAELRVVRA AVSERTNQAL LDEQNIHRML QARAPPLQQL FGGSTFEFGS
201: SSSANTGMEM QQMHMAMPPM QGFAAGMDMH HMPMEMPPPL GSAYGMDMQQ ILMPTPSPSM FDAGMEMQQM VTVMSPQLEF ATEAEMQQMF MAMSPMSELS
301: AGMEMPPPTG IAAGVEMVQQ GPGPNMGFPY

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.