Factsheet for TraesCS3D01G540700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

mitochondrion 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G608600.1	Wheat	mitochondrion	96.51	95.77
TraesCS3A01G535200.1	Wheat	nucleus	96.51	95.77
HORVU3Hr1G116800.1	Barley	mitochondrion, nucleus, plastid	66.67	95.03
TraesCS6D01G319100.1	Wheat	nucleus	80.62	80.62
Os01t0975800-00	Rice	nucleus	48.06	59.62
Zm00001d039080_P001	Maize	nucleus	56.98	59.51
EES19977	Sorghum	nucleus	55.04	57.96
Zm00001d009628_P001	Maize	nucleus	55.04	57.26
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	13.18	55.74
Os09t0116800-00	Rice	mitochondrion	45.35	55.71
TraesCS3D01G513800.1	Wheat	nucleus, plastid	50.39	46.26
GSMUA_Achr8P07230_001	Banana	nucleus	39.92	43.64
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	37.6	43.11
TraesCS3D01G446900.1	Wheat	nucleus	52.33	40.91
TraesCS5D01G474300.1	Wheat	mitochondrion, nucleus, plastid	25.58	38.15
TraesCS1D01G310700.1	Wheat	nucleus	45.74	38.06
TraesCS1D01G062500.1	Wheat	nucleus	25.19	35.91
TraesCS3D01G532900.1	Wheat	nucleus	34.5	35.46
TraesCS7D01G337200.1	Wheat	plastid	25.58	34.2
TraesCS7D01G337000.1	Wheat	plastid	24.03	31.63

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS3D01G540700	EnsemblPlants:TraesCS3D01G540700.1
TIGR:cd00265	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:612263729..612264505

Molecular Weight (calculated)

27577.0 Da

IEP (calculated)

7.582

GRAVY (calculated)

-0.304

Length

258 amino acids

Sequence
(BLAST)

001: MAMATAPRRR ASMGRQKIEI RKIESEEARQ VCFSKRRAGL FKKASELAVL CGAEVAAVVF SPAGKAFSFG HPSVEAIFDR FVPSAAQHPG AVAAGAGLGA
101: SGDRNLAELN RQYGELRTQL EAEKARKERA EEAMAKERAA GNQMAAWLDA DLRDMGEEEL MAFAAALVEV QAAVSERANQ VLQEALNVGR SRSASRMLQA
201: PPPHQQQQQL AGGGTFEFGG TSTNAGMEIQ QMLLAMPPPP PPGFAPGMDI VQHGGFPY

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.