Factsheet for TraesCS3D01G532900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G527400.1	Wheat	nucleus	70.52	44.36
TraesCS3B01G595700.1	Wheat	nucleus	68.13	44.19
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	9.56	39.34
Zm00001d009628_P001	Maize	nucleus	35.86	36.29
EES19977	Sorghum	nucleus	34.66	35.51
Zm00001d039080_P001	Maize	nucleus	34.66	35.22
Os01t0975800-00	Rice	nucleus	29.08	35.1
TraesCS3D01G513800.1	Wheat	nucleus, plastid	38.65	34.52
TraesCS3D01G540700.1	Wheat	mitochondrion, nucleus, plastid	35.46	34.5
TraesCS6D01G319100.1	Wheat	nucleus	35.06	34.11
Os09t0116800-00	Rice	mitochondrion	27.09	32.38
TraesCS3D01G446900.1	Wheat	nucleus	37.05	28.18
GSMUA_Achr8P07230_001	Banana	nucleus	26.29	27.97
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	23.51	26.22
TraesCS1D01G310700.1	Wheat	nucleus	30.28	24.52
TraesCS1D01G062500.1	Wheat	nucleus	17.13	23.76
TraesCS5D01G474300.1	Wheat	mitochondrion, nucleus, plastid	15.14	21.97
TraesCS7D01G337000.1	Wheat	plastid	17.13	21.94
TraesCS7D01G337200.1	Wheat	plastid	16.73	21.76

Protein Annotations

EnsemblPlants:TraesCS3D01G532900.1	EnsemblPlantsGene:TraesCS3D01G532900	Gene3D:3.40.1810.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	ncoils:Coil	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225	PFAM:PF00319	PFscan:PS50066
PRINTS:PR00404	SEG:seg	SMART:SM00432	SUPFAM:SSF55455	MapMan:15.5.14	:

Description

No Description!

Coordinates

chr3D:-:608748693..608749448

Molecular Weight (calculated)

27475.0 Da

IEP (calculated)

11.200

GRAVY (calculated)

-0.536

Length

251 amino acids

Sequence
(BLAST)

001: MAAPNQRGGS GRKKTVIRRI EQQDARQVSY AKRRVGLFNK ASELSVLTGA QLAALAFPPG GKVFSFGHPS VDPVVERFLA GEGLGACPMA QGAANGRFLA
101: AEGAGAGAGE GAADEDNVKR LAQQLAEMRT ELREVKKQTK RIDKAMAKER AAGDQIAAWV DPKARDMGDE DMAAFFATLL KVKTDVSDRG WRQSYSNGLW
201: RCRHRSSLPG WRWRSRCLSR TPKKRRSKPV SIGSSKIIHA WTIVPQSVCR Q

Best Arabidopsis Sequence Match ( AT5G49420.1 )
(BLAST)

001: MVKKGGTKRK IAIETIQKRD SLRVTCTKRR EGLYSKASQL CLLSDAQIAI LATPPSSESN VSFYSFGHSS VDAVVSAFLS GQRPVPKDNK ETREDVGICL
101: TRNNLGLGFW WNDESLARSE NPQEISEAID SMRTLLRNLK ELRADEALAC NQAFVNDRED LKNNDKCDFV SDHETHDQTL ILQSASPICC IPENLNEITQ
201: EPNQTLNIQS STSAICCVPD NSPENFNEIT EEQDQIRSIC ETFCVMDNNA ALPEMNLDYD QDIGFDTPFE SALNDWFSDN TTHQEISASI LNAVVDDQVS
301: VDLTPFSYFQ RCLDGDNLRF SDCFKDFANT ISAL

Arabidopsis Description

MADS-box protein [Source:UniProtKB/TrEMBL;Acc:Q7X9H5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.