Factsheet for TraesCS6D01G319100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G338400.1	Wheat	nucleus	93.41	96.02
TraesCS6B01G369100.1	Wheat	nucleus	94.57	94.94
HORVU6Hr1G081660.1	Barley	nucleus	65.5	93.37
TraesCS6B01G369000.1	Wheat	nucleus	91.47	92.19
TraesCS3D01G540700.1	Wheat	mitochondrion, nucleus, plastid	80.62	80.62
Zm00001d039080_P001	Maize	nucleus	58.91	61.54
EES19977	Sorghum	nucleus	56.98	60.0
Zm00001d009628_P001	Maize	nucleus	56.98	59.27
Os01t0975800-00	Rice	nucleus	45.35	56.25
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	13.18	55.74
Os09t0116800-00	Rice	mitochondrion	42.25	51.9
TraesCS3D01G513800.1	Wheat	nucleus, plastid	50.78	46.62
GSMUA_Achr8P07230_001	Banana	nucleus	39.53	43.22
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	37.21	42.67
TraesCS3D01G446900.1	Wheat	nucleus	51.94	40.61
TraesCS5D01G474300.1	Wheat	mitochondrion, nucleus, plastid	26.74	39.88
TraesCS1D01G062500.1	Wheat	nucleus	26.36	37.57
TraesCS1D01G310700.1	Wheat	nucleus	44.96	37.42
TraesCS7D01G337200.1	Wheat	plastid	27.13	36.27
TraesCS3D01G532900.1	Wheat	nucleus	34.11	35.06
TraesCS7D01G337000.1	Wheat	plastid	25.58	33.67

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS6D01G319100	EnsemblPlants:TraesCS6D01G319100.1
TIGR:cd00265	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:427170918..427171694

Molecular Weight (calculated)

27570.2 Da

IEP (calculated)

6.095

GRAVY (calculated)

-0.242

Length

258 amino acids

Sequence
(BLAST)

001: MSMAPKRKLS MGRQKIEIRR IESEEARQVC FSKRRAGLFK KVSELAVLCG AEVAAVVFSP AGKAFSFGHP SVEAILDRFI PSAAQLGVAG AGAGLGAAGD
101: RNLAELNRQY GQLREQLEAE KARKERAEEA MAKERAKGSP AAAWLDADLR DLGEEELMAF AAALADVQAA VSERANQVLQ EALDVGRARS ASRMLLAPPP
201: QQQLAGGGGF EFASCGANSR NEMEMQQMLM AMPPPPEFAA TGMEMVQQGI GQNAGFPY

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.