Factsheet for TraesCS3D01G513800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G319100.1	Wheat	nucleus	46.62	50.78
TraesCS3D01G540700.1	Wheat	mitochondrion, nucleus, plastid	46.26	50.39
TraesCS3D01G446900.1	Wheat	nucleus	51.96	44.24
Zm00001d039080_P001	Maize	nucleus	38.08	43.32
EES19977	Sorghum	nucleus	37.01	42.45
Zm00001d009628_P001	Maize	nucleus	37.01	41.94
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	8.9	40.98
TraesCS3D01G532900.1	Wheat	nucleus	34.52	38.65
Os01t0975800-00	Rice	nucleus	27.4	37.02
Os09t0116800-00	Rice	mitochondrion	25.62	34.29
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	25.27	31.56
TraesCS1D01G062500.1	Wheat	nucleus	18.51	28.73
TraesCS1D01G310700.1	Wheat	nucleus	31.32	28.39
TraesCS5D01G474300.1	Wheat	mitochondrion, nucleus, plastid	17.44	28.32
GSMUA_Achr8P07230_001	Banana	nucleus	23.49	27.97
TraesCS7D01G337000.1	Wheat	plastid	18.51	26.53
TraesCS7D01G337200.1	Wheat	plastid	17.79	25.91

Protein Annotations

EnsemblPlants:TraesCS3D01G513800.1	EnsemblPlantsGene:TraesCS3D01G513800	Gene3D:3.40.1810.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	ncoils:Coil	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225	PFAM:PF00319	PFscan:PS50066
PRINTS:PR00404	SEG:seg	SMART:SM00432	SUPFAM:SSF55455	MapMan:15.5.14	:

Description

No Description!

Coordinates

chr3D:+:597672128..597673106

Molecular Weight (calculated)

30446.0 Da

IEP (calculated)

9.137

GRAVY (calculated)

-0.253

Length

281 amino acids

Sequence
(BLAST)

001: MAPKRKGGNG RKKTVLLSIV KEDARHVCFS KRKRGLFSKT SALSLLTGAQ VAAVIFSPGG KVFSFGHPSV DAVVNRFMAG DAAVVQAAAD DNGLQTLQLQ
101: HGDMRTELAD QKKRKKRAEE ALDKERAGGD QIASWLHPDV RDMGHDDMAA FAAALLQVQA AVSGRANQVL VEAFRVDISR MLQVPPPPPP PLQLFGASTI
201: EFGSSSSSAN AGMEMQQMQM VMEMPPPPDF PAVMGMQQLV MEMPPQPRFE AAMEMTPLQE FVAGMQKVQR QGLGPNADFP Y

Best Arabidopsis Sequence Match ( AT4G36590.1 )
(BLAST)

001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS

Arabidopsis Description

MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.