Factsheet for TraesCS1D01G310700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G322300.1	Wheat	nucleus	89.03	87.9
HORVU1Hr1G067950.1	Barley	nucleus	71.61	51.39
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	9.35	47.54
TraesCS3D01G540700.1	Wheat	mitochondrion, nucleus, plastid	38.06	45.74
TraesCS6D01G319100.1	Wheat	nucleus	37.42	44.96
Zm00001d039080_P001	Maize	nucleus	31.61	39.68
Os01t0975800-00	Rice	nucleus	25.81	38.46
EES19977	Sorghum	nucleus	30.32	38.37
Zm00001d009628_P001	Maize	nucleus	30.65	38.31
Os09t0116800-00	Rice	mitochondrion	24.84	36.67
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	24.19	33.33
GSMUA_Achr8P07230_001	Banana	nucleus	25.16	33.05
TraesCS3D01G513800.1	Wheat	nucleus, plastid	28.39	31.32
TraesCS3D01G446900.1	Wheat	nucleus	32.26	30.3
TraesCS3D01G532900.1	Wheat	nucleus	24.52	30.28
TraesCS5D01G474300.1	Wheat	mitochondrion, nucleus, plastid	15.48	27.75
TraesCS1D01G062500.1	Wheat	nucleus	15.48	26.52
TraesCS7D01G337200.1	Wheat	plastid	16.13	25.91
TraesCS7D01G337000.1	Wheat	plastid	16.13	25.51

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS1D01G310700	EnsemblPlants:TraesCS1D01G310700.1
TIGR:cd00265	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:406676068..406677000

Molecular Weight (calculated)

32111.3 Da

IEP (calculated)

4.552

GRAVY (calculated)

-0.132

Length

310 amino acids

Sequence
(BLAST)

001: MGRKKIVIRR IENKAARDIC FSKRRQGLFR KANELAVMCG AEVAAVVYSR AGKAYSFGHP SAEDIVDRFL RPAEQAGAAG AGMGAAVDPD RLAELQQKYN
101: KLGADLDAVE QQKERWGEAI AKGRAEGSQA AAWLDAVADQ RDMGDADMLA CMATLREAQV TVAALVNQVL QNGRRDKEAA LAALPPQLLA GVGGFELGGT
201: GQMMAVMPTP GFAVGGGFEL GGTSANGGME ELMTAIAGGG LELGGTSVNG GTEQMVTVMP TPGFDPWFEL GGTSANGGME DLMTEIAGGD GFELGGTSVN
301: GGTEHSPAWV

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.