Factsheet for HORVU1Hr1G067950.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G310700.1	Wheat	nucleus	51.39	71.61
TraesCS1B01G322300.1	Wheat	nucleus	50.93	70.06
HORVU3Hr1G116800.1	Barley	mitochondrion, nucleus, plastid	22.69	54.14
HORVU6Hr1G081660.1	Barley	nucleus	22.45	53.59
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	6.71	47.54
Zm00001d039080_P001	Maize	nucleus	23.38	40.89
Os01t0975800-00	Rice	nucleus	19.68	40.87
EES19977	Sorghum	nucleus	22.69	40.0
Zm00001d009628_P001	Maize	nucleus	22.69	39.52
HORVU3Hr1G086260.1	Barley	nucleus	30.56	39.4
Os09t0116800-00	Rice	mitochondrion	18.06	37.14
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	17.36	33.33
GSMUA_Achr8P07230_001	Banana	nucleus	17.59	32.2
HORVU7Hr1G081190.1	Barley	nucleus	9.95	28.67
HORVU5Hr1G110410.2	Barley	nucleus	11.11	24.74
HORVU7Hr1G081070.1	Barley	mitochondrion, nucleus	11.81	19.1
HORVU5Hr1G110470.1	Barley	plastid	10.88	18.95

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:HORVU1Hr1G067950	EnsemblPlants:HORVU1Hr1G067950.1	InterPro:IPR002100	InterPro:IPR036879
UniProt:M0WZ36	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00029644DE	SEG:seg

Description

No Description!

Coordinates

chrchr1H:+:479719345..479720643

Molecular Weight (calculated)

45259.3 Da

IEP (calculated)

4.487

GRAVY (calculated)

-0.305

Length

432 amino acids

Sequence
(BLAST)

001: MAGRRGPAGK GRKKVVIQPI ENQAARDVCF SKRRKGLFSK ASQLAVMCGA EVAAVVYSPA GNAYSFGHPS AEDIINRFLG TGGQDGAAGA RQLGAAVDRN
101: RLAELQQEYN KLGKELAAMD ERKESWGEAM AKDRAEGSQA AAWLDAVADR RDMGDADKLA CAASLREAQV AVSARVNQVL QDGRREQQAA LAARVNQVLQ
201: AQKAPLGPAA LPPQLLAGGG GFELGGTSVN GWTEQMIQQE QIMTVMPTPG FAGGVGFELG GTSANGVMEE MMSAIASGGG FEFGGTSAND GMEENFQQQQ
301: MVTAMPQLPG LLAGGGGFEL GGTSADGGMY EMMMTAMPPP LGFATGMEMM QQQEQQMMPS GMMPTPPGLA AGMEMQQQQT MTEPPPLPAF AAGTEMMQQQ
401: EMMAATPPPA PGFTAGMEMM HQESGPYGSF PN

Best Arabidopsis Sequence Match ( AT4G36590.1 )
(BLAST)

001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS

Arabidopsis Description

MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.