Factsheet for HORVU3Hr1G086260.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G359300.1	Wheat	nucleus	70.15	71.43
TraesCS5B01G008000.1	Wheat	nucleus	49.25	64.71
TraesCS3D01G446900.1	Wheat	nucleus	62.99	63.94
TraesCS5A01G010400.1	Wheat	nucleus	55.52	60.98
HORVU3Hr1G116800.1	Barley	mitochondrion, nucleus, plastid	31.94	59.12
HORVU6Hr1G081660.1	Barley	nucleus	31.94	59.12
TraesCS3B01G493100.1	Wheat	nucleus	60.3	57.71
TraesCS3A01G454500.1	Wheat	nucleus	50.75	54.49
Zm00001d039080_P001	Maize	nucleus	31.04	42.11
EES19977	Sorghum	nucleus	30.75	42.04
Zm00001d009628_P001	Maize	nucleus	31.04	41.94
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	7.46	40.98
Os01t0975800-00	Rice	nucleus	23.88	38.46
Os09t0116800-00	Rice	mitochondrion	23.58	37.62
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	22.99	34.22
GSMUA_Achr8P07230_001	Banana	nucleus	22.39	31.78
HORVU1Hr1G067950.1	Barley	nucleus	39.4	30.56
HORVU7Hr1G081190.1	Barley	nucleus	13.13	29.33
HORVU5Hr1G110410.2	Barley	nucleus	15.22	26.29
HORVU5Hr1G110470.1	Barley	plastid	15.22	20.56
HORVU7Hr1G081070.1	Barley	mitochondrion, nucleus	16.12	20.22

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A287M2V1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:HORVU3Hr1G086260	EnsemblPlants:HORVU3Hr1G086260.1	InterPro:IPR002100
InterPro:IPR036879	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	TMHMM:TMhelix	UniParc:UPI000B481950
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:616452762..616454095

Molecular Weight (calculated)

36358.4 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.214

Length

335 amino acids

Sequence
(BLAST)

001: MVGRATTAPK RKGGNGRQKI AIRRIEKKDA RQVCFAKRRQ GLFNKAAMLA AMCGAQVAAV TFSPGGKAFS FGHPSAQAVI DRFLAGANAL VVQGATDDNE
101: LKKLHLQHGE LRTQLKEVKL RKQCVEEAMA KERAAGDQIA AWLDPELGDM GEEEMMAFAA ELMTVRAAVS ERANQVLLEV QNVSLFGGST FELGSSSSAN
201: ARMEMQQMQN VSLFGGSTYE LGSSSSASAR MEMQQMQMVI PSTQGFAAGM HMHMHQMLMT MPPPPGLSYG VDMLQMLMSS PPSPVFGIGV NMQQMVMTMQ
301: PQPEFAAETE MQPQPEFAAE TEMQQVTMTM PPPLG

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.