Factsheet for TraesCS5A01G010400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G008000.1	Wheat	nucleus	65.9	78.82
TraesCS3A01G359300.1	Wheat	nucleus	63.28	58.66
TraesCS3A01G454500.1	Wheat	nucleus	59.67	58.33
HORVU3Hr1G086260.1	Barley	nucleus	60.98	55.52
TraesCS6A01G338400.1	Wheat	nucleus	37.05	45.02
TraesCS3A01G535200.1	Wheat	nucleus	37.7	44.23
Zm00001d039080_P001	Maize	nucleus	28.52	35.22
Zm00001d009628_P001	Maize	nucleus	28.2	34.68
EES19977	Sorghum	nucleus	27.54	34.29
TraesCS3A01G527400.1	Wheat	nucleus	43.61	33.33
Os01t0975800-00	Rice	nucleus	20.98	30.77
Os09t0116800-00	Rice	mitochondrion	20.66	30.0
GSMUA_Achr8P07230_001	Banana	nucleus	20.33	26.27
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	5.25	26.23
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	18.03	24.44
TraesCS6A01G138300.1	Wheat	nucleus	14.75	22.84
TraesCS7A01G342300.1	Wheat	plastid	14.1	21.83
TraesCS7A01G342600.1	Wheat	nucleus, plastid	13.11	20.3
TraesCS1A01G013100.1	Wheat	nucleus	12.46	20.11
TraesCS1A01G061800.1	Wheat	nucleus	10.49	18.71

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	PFAM:PF00319
PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS5A01G010400	EnsemblPlants:TraesCS5A01G010400.1	TIGR:cd00120	SEG:seg

Description

No Description!

Coordinates

chr5A:-:6773230..6774222

Molecular Weight (calculated)

33433.6 Da

IEP (calculated)

8.488

GRAVY (calculated)

-0.202

Length

305 amino acids

Sequence
(BLAST)

001: MAPKRKGGNG RQKTIMRRVE KEGARQVCFA KRRQGLFNKA NELAVMCGAE VAAISYSPGV LSATDNNKLK NLHLQHGELR TQLKEVKMRK ECIEEAMAKK
101: CVVGDQIAVW LNPKLGDMRE EEMMAFAAKL MPVRAAISEC ANQVLLDLGM ENILRALQAP GVPLPQQLIG GSTFEFGSTS TNTRMEMQQM HMAMPPTRGF
201: AIGMDMHHMP MAMPPPGLAY GMNMQQILMS IPPPSGFGAG MEMQQMVMVM SPQPEFIAGT EKQQVTMAMP LPEFPANVEM PPPMGIAAGT EMVQQATGTN
301: MGFPY

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.