Factsheet for TraesCS3A01G527400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G595700.1	Wheat	nucleus	85.21	87.86
TraesCS3D01G532900.1	Wheat	nucleus	44.36	70.52
TraesCS3A01G359300.1	Wheat	nucleus	38.6	46.81
TraesCS5A01G010400.1	Wheat	nucleus	33.33	43.61
TraesCS3A01G535200.1	Wheat	nucleus	28.32	43.46
TraesCS6A01G338400.1	Wheat	nucleus	27.32	43.43
EES19977	Sorghum	nucleus	26.32	42.86
Zm00001d009628_P001	Maize	nucleus	26.57	42.74
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	6.52	42.62
Zm00001d039080_P001	Maize	nucleus	26.32	42.51
TraesCS3A01G454500.1	Wheat	nucleus	31.83	40.71
Os01t0975800-00	Rice	nucleus	19.8	37.98
Os09t0116800-00	Rice	mitochondrion	18.8	35.71
GSMUA_Achr8P07230_001	Banana	nucleus	18.05	30.51
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	16.29	28.89
TraesCS1A01G013100.1	Wheat	nucleus	12.53	26.45
TraesCS6A01G138300.1	Wheat	nucleus	12.53	25.38
TraesCS7A01G342300.1	Wheat	plastid	12.03	24.37
TraesCS7A01G342600.1	Wheat	nucleus, plastid	11.28	22.84
TraesCS1A01G061800.1	Wheat	nucleus	9.77	22.81

Protein Annotations

EnsemblPlants:TraesCS3A01G527400.1	EnsemblPlantsGene:TraesCS3A01G527400	Gene3D:3.40.1810.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	ncoils:Coil	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225	PFAM:PF00319	PFscan:PS50066
PRINTS:PR00404	SEG:seg	SMART:SM00432	SUPFAM:SSF55455	MapMan:15.5.14	:

Description

No Description!

Coordinates

chr3A:-:741844276..741845475

Molecular Weight (calculated)

42772.7 Da

IEP (calculated)

4.642

GRAVY (calculated)

-0.219

Length

399 amino acids

Sequence
(BLAST)

001: MAAPNQRGGS GRKKTVLRRI EQEDARHVSY AKRRAGLFNK ASELAVLTRA QVAALAFSPG GKAFTFGHPS VDSVVERFLA GEGLGACPRA QGAANDRFLA
101: AEGAGAGAGA GEGATDEDNV KRLAQKLAEM RAELTEVKKQ KKRIDKAMAK ERAAGDQIAA WVDPKVRDMG DDDMAAFFAT LLKVKTDVSH RANQVLLDFS
201: RKVEITRLPP AQIFGGSIFE IGSSSGSAHA GMEFQFLVPP PQGQGFEAGM DMHQMVMAAL PPPQGFPSAI DMQVQQQMVM EMPPAQVLAA GSMDMQQQIV
301: MEMPPAQVIA AGVDMQEMPP AQVVAAGMDM QEMPPPPGFA AGIDIMEQMQ MMIGQPPSFE AGMETEFQQC LMAMPPPEFP AGLEMAQQVL EPNAEEEEI

Best Arabidopsis Sequence Match ( AT4G36590.1 )
(BLAST)

001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS

Arabidopsis Description

MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.