Factsheet for TraesCS3B01G612600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G612500.1	Wheat	nucleus	88.41	91.19
TraesCS3B01G612400.1	Wheat	nucleus	92.07	90.42
TraesCS3B01G612900.1	Wheat	nucleus	75.0	86.62
TraesCS3B01G612800.1	Wheat	nucleus	74.7	86.27
TraesCS3B01G612700.1	Wheat	nucleus	50.0	84.54
TraesCS3B01G612300.1	Wheat	nucleus	41.77	79.19
TraesCS3B01G608700.1	Wheat	mitochondrion, plastid	71.34	74.76
TraesCS3B01G595700.1	Wheat	nucleus	67.68	57.36
TraesCS5B01G008000.1	Wheat	nucleus	38.72	49.8
TraesCS3B01G608600.1	Wheat	mitochondrion	39.02	49.23
TraesCS6B01G369000.1	Wheat	nucleus	36.59	46.88
TraesCS6B01G369100.1	Wheat	nucleus	36.59	46.69
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	8.23	44.26
TraesCS3B01G493100.1	Wheat	nucleus	45.73	42.86
Zm00001d039080_P001	Maize	nucleus	32.01	42.51
EES19977	Sorghum	nucleus	31.4	42.04
Zm00001d009628_P001	Maize	nucleus	31.4	41.53
Os01t0975800-00	Rice	nucleus	25.3	39.9
Os09t0116800-00	Rice	mitochondrion	23.17	36.19
TraesCS1B01G322300.1	Wheat	nucleus	32.32	33.76
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	21.65	31.56
GSMUA_Achr8P07230_001	Banana	nucleus	21.65	30.08
TraesCS1B01G080200.1	Wheat	nucleus	15.55	28.65
TraesCS5B01G471900.1	Wheat	mitochondrion	13.72	26.01
TraesCS7B01G211300.1	Wheat	plastid	14.94	25.0
TraesCS7B01G240400.1	Wheat	plastid	14.94	25.0
TraesCS7B01G240500.1	Wheat	plastid	14.63	24.87

Protein Annotations

EnsemblPlants:TraesCS3B01G612600.1	EnsemblPlantsGene:TraesCS3B01G612600	Gene3D:3.40.1810.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	ncoils:Coil	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225	PFAM:PF00319	PFscan:PS50066
PRINTS:PR00404	SEG:seg	SMART:SM00432	SUPFAM:SSF55455	MapMan:15.5.14	:

Description

No Description!

Coordinates

chr3B:+:830055777..830057038

Molecular Weight (calculated)

35883.9 Da

IEP (calculated)

4.921

GRAVY (calculated)

-0.413

Length

328 amino acids

Sequence
(BLAST)

001: MVAPNRRGGS GRKKIVIRRI EQEDARFVCY SKRRQGFFNK ATDLAVLTGA QVAALAFSPR GRAFSFGHPS VHSVVERFLA GEAAGAAARE EGAAGEDEKL
101: EKLQQEFDEL RTELTELKKR TKRTDKAMVR ERSAGDRIAA WFDPKARDMG MGDEDMAAFF AALMQMKDAV SDRANQVLLE AMHAHMSLMA EVAPPPPPQI
201: FGGSTFEFGS SSGTANDGME FQFLAPPPQE QGFEAAMDMQ QMVMAPQPPS HVVAAGMDVQ DMPPPPGLAA GMDLEQMQMT MSKPPGFDAG LDKEIDQWLD
301: VMLPRPEFTA GMETVQQGLH QPNAGFPY

Best Arabidopsis Sequence Match ( AT4G36590.1 )
(BLAST)

001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS

Arabidopsis Description

MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.