Factsheet for PGSC0003DMT400071001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003073
PGSC0003DMT400089615

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	PGSC0003DMT400003073	AT1G31630.1	15805477
AT5G58890.1	PGSC0003DMT400089615	AT1G31630.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085676	Potato	nucleus	38.4	65.35
Solyc11g020320.1.1	Tomato	nucleus	40.72	57.45
PGSC0003DMT400023977	Potato	nucleus	40.72	44.76
PGSC0003DMT400071682	Potato	nucleus	17.01	22.07
AT5G55690.1	Thale cress	nucleus	15.21	21.3
PGSC0003DMT400064120	Potato	nucleus	15.98	19.38
Bra028965.1-P	Field mustard	mitochondrion, nucleus	13.66	19.34
CDY11987	Canola	mitochondrion, nucleus	13.66	19.34
CDY36759	Canola	mitochondrion, nucleus	13.66	19.34
AT5G58890.1	Thale cress	nucleus	12.37	16.33
CDX80329	Canola	nucleus	12.11	15.61
CDY54181	Canola	nucleus	11.86	15.28
Bra002611.1-P	Field mustard	nucleus	8.51	11.11

Protein Annotations

EntrezGene:107063407	MapMan:15.5.14	Gene3D:3.40.1810.10	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	UniProt:M1CN25	InterPro:MADS_SRF-like	PFAM:PF00319	EnsemblPlantsGene:PGSC0003DMG400027613
PGSC:PGSC0003DMG400027613	EnsemblPlants:PGSC0003DMT400071001	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF176
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000296DC7A	RefSeq:XP_015170740.1
SEG:seg	:	:	:	:	:

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027613]

Coordinates

chr11:+:12890859..12892025

Molecular Weight (calculated)

44334.2 Da

IEP (calculated)

6.520

GRAVY (calculated)

-0.787

Length

388 amino acids

Sequence
(BLAST)

001: MGRSKIKVEF IQDHKKRKST LVNRKAGLVK KISELSILCD IKACMIIYEG NNHQMWPNDP NEVKELINLY KTQPFEGRSK RGKTLSNYFE YDQKKRAEVK
101: VEKDRPTWDS RFDYFENDEK KKAEIKVEKD PTTWDSRFDY FENDEKKKAE IKVEKYPTWN SRFDYLSQKE LQNLAGVVEK RMEKAKGKIE LLKSMNVHIG
201: SSSLSHQQIW DFPELMNNNN LMNHTTLWPI SNMNSFTDHN NFFHSNIPIS GVNSMGAGMD NGLLTIEDYQ FCNANYSMMN EAENWSANDG IGSSSTMQPM
301: ANNGIGSSST RHPMVNNGVD SSSIMHPMEN NGVGSSSTMQ PMGNNGIDST STMQLMENGI GSSLTVQPID QYPFIYTDST HDMSYGFV

Best Arabidopsis Sequence Match ( AT5G55690.1 )
(BLAST)

001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM

Arabidopsis Description

At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.