Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- extracellular 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400003073 | |
| PGSC0003DMT400089615 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58890.1 | PGSC0003DMT400003073 | AT1G31630.1 | 15805477 |
| AT5G58890.1 | PGSC0003DMT400089615 | AT1G31630.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400085676 | Potato | nucleus | 34.28 | 53.07 |
| PGSC0003DMT400071001 | Potato | nucleus | 44.76 | 40.72 |
| Solyc11g020320.1.1 | Tomato | nucleus | 29.46 | 37.82 |
| PGSC0003DMT400071682 | Potato | nucleus | 12.18 | 14.38 |
| AT5G55690.1 | Thale cress | nucleus | 11.05 | 14.08 |
| PGSC0003DMT400064120 | Potato | nucleus | 12.75 | 14.06 |
| Bra028965.1-P | Field mustard | mitochondrion, nucleus | 9.63 | 12.41 |
| CDY11987 | Canola | mitochondrion, nucleus | 9.63 | 12.41 |
| CDY36759 | Canola | mitochondrion, nucleus | 9.63 | 12.41 |
| AT5G58890.1 | Thale cress | nucleus | 8.22 | 9.86 |
| CDY54181 | Canola | nucleus | 7.65 | 8.97 |
| CDX80329 | Canola | nucleus | 6.8 | 7.97 |
| Bra002611.1-P | Field mustard | nucleus | 6.52 | 7.74 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400023977 | EnsemblPlantsGene:PGSC0003DMG400009274 | PGSC:PGSC0003DMG400009274 | SEG:seg | UniParc:UPI000296C47C | UniProt:M1AJ89 |
| MapMan:35.2 | : | : | : | : | : |
Description
Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400009274]
Coordinates
chr11:-:13708433..13709494
Molecular Weight (calculated)
39808.4 Da
IEP (calculated)
4.505
GRAVY (calculated)
-0.699
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MWPNDPNEVT ELIDFYKNQP FQGRSKRGKT LSNYFEDDEK KRAEIKVEKD PSTWDSRFDY FENDEKKKVE IKVEKYPTWD SRFDYLSEKE LQNLAGVVEK
101: KMEKAKGKIE LLKSMNVHIG SCSVSHQQIW DNNLMNQTTL SLWPISNVNS FTDYNNFFQS NIPISGVNSM GAGMDNGLLT IEDYQFCNAN YSKMIEAENW
201: SANVGIGSSS TMQPMGNNYG IGSTSTMQLM GNNEIGSTLT MQHMGNNGIG SSSTMTMQPM DQYPFIYNDS TRDIASSSTM QPIGDNGIGS SSTMQPMGNN
301: GIGSSSTIQP MDQYPFMYND STHAIGSSLT VQPMDQYPFV YNDSTHDMSY RFV
101: KMEKAKGKIE LLKSMNVHIG SCSVSHQQIW DNNLMNQTTL SLWPISNVNS FTDYNNFFQS NIPISGVNSM GAGMDNGLLT IEDYQFCNAN YSKMIEAENW
201: SANVGIGSSS TMQPMGNNYG IGSTSTMQLM GNNEIGSTLT MQHMGNNGIG SSSTMTMQPM DQYPFIYNDS TRDIASSSTM QPIGDNGIGS SSTMQPMGNN
301: GIGSSSTIQP MDQYPFMYND STHAIGSSLT VQPMDQYPFV YNDSTHDMSY RFV
001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM
Arabidopsis Description
At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.