Factsheet for Solyc11g020320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g051830.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	Solyc05g051830.2.1	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085676	Potato	nucleus	44.36	53.51
PGSC0003DMT400071001	Potato	nucleus	57.45	40.72
Solyc11g020660.1.1	Tomato	nucleus	39.27	34.62
Solyc11g020620.1.1	Tomato	nucleus	42.18	33.92
PGSC0003DMT400023977	Potato	nucleus	37.82	29.46
Solyc01g103550.1.1	Tomato	nucleus	20.73	18.33
AT5G55690.1	Thale cress	nucleus	16.36	16.25
AT5G58890.1	Thale cress	nucleus	15.27	14.29
CDX80329	Canola	nucleus	15.64	14.29
Bra028965.1-P	Field mustard	mitochondrion, nucleus	14.18	14.23
CDY11987	Canola	mitochondrion, nucleus	14.18	14.23
CDY36759	Canola	mitochondrion, nucleus	14.18	14.23
CDY54181	Canola	nucleus	14.91	13.62
Bra002611.1-P	Field mustard	nucleus	8.0	7.41

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	UniProt:K4D6Y4	InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF176	SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc11g020320.1
EnsemblPlants:Solyc11g020320.1.1	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00027694F5	SEG:seg	:

Description

No Description!

Coordinates

chr11:-:10842641..10843468

Molecular Weight (calculated)

31759.5 Da

IEP (calculated)

6.683

GRAVY (calculated)

-0.739

Length

275 amino acids

Sequence
(BLAST)

001: MGRSKIKMEL IEDHKKRKST LVNRKAGLVK KISELSILCD IKASMIIYEG NYNYQIWPND SNDVQDLINL YKNQSQDGRT KRGKTLSNFF KNDEKKNNEF
101: KVEKYPTWDS RFGYLSQIEL QNLVGVVEKR IEKAKEKIEL LKSMNDQDPN IGSSSFSHQQ QIWNNNNLMN QTTQWPFSYV NPFTHYDNFF QANIPISGAN
201: SMGAGMDDGL LTIDDYQFNN TDYSTMIETE NCLVKNGIGS SSIMHPMMNN GIDSSSTMEY PFIYNGYTHM PYGFQ

Best Arabidopsis Sequence Match ( AT5G55690.1 )
(BLAST)

001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM

Arabidopsis Description

At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.