CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55690.1	CDX73678	AT3G51920.1	17360592
AT5G55690.1	CDX95314	AT3G51920.1	17360592
AT5G55690.1	CDY23174	AT3G51920.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36759	Canola	mitochondrion, nucleus	100.0	100.0
Bra028965.1-P	Field mustard	mitochondrion, nucleus	99.27	99.27
AT5G55690.1	Thale cress	nucleus	68.25	67.51
KRG93896	Soybean	nucleus	10.58	30.85
CDY54181	Canola	nucleus	32.12	29.24
CDX80329	Canola	nucleus	31.75	28.9
KRH42537	Soybean	nucleus	22.26	22.34
KRH58631	Soybean	nucleus	22.99	20.13
KRH44465	Soybean	nucleus	16.42	20.09
KRH42540	Soybean	nucleus	22.26	20.07
PGSC0003DMT400085676	Potato	nucleus	14.96	17.98
VIT_15s0021g02220.t01	Wine grape	nucleus	18.61	17.06
VIT_15s0021g02250.t01	Wine grape	nucleus	18.98	16.51
KRG93950	Soybean	nucleus	15.69	14.53
KRH18233	Soybean	nucleus	15.69	14.33
Solyc11g020320.1.1	Tomato	nucleus	14.23	14.18
KRG93859	Soybean	mitochondrion	17.88	13.76
PGSC0003DMT400071001	Potato	nucleus	19.34	13.66
KRH47443	Soybean	nucleus	16.79	13.03
KRG93897	Soybean	mitochondrion	16.79	13.03
Solyc11g020620.1.1	Tomato	nucleus	16.06	12.87
KRH37770	Soybean	cytosol	8.76	12.7
Solyc11g020660.1.1	Tomato	nucleus	13.5	11.86
KRH12811	Soybean	cytosol	15.33	10.88
KRG93920	Soybean	mitochondrion	11.68	10.67
PGSC0003DMT400023977	Potato	nucleus	12.41	9.63

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078HH72	UniProt:A0A078HH72	EnsemblPlants:CDY11987	ProteinID:CDY11987
ProteinID:CDY11987.1	ProteinID:CDY36759.1	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00060837001
InterPro:IPR002100	InterPro:IPR036879	InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF176	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0004EC3D75	SEG:seg	:	:	:	:

Description

BnaC03g14130DBnaA03g11270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HH72]

Coordinates

chrLK032015:+:718785..719609

Molecular Weight (calculated)

31460.7 Da

IEP (calculated)

8.239

GRAVY (calculated)

-0.628

Length

274 amino acids

Sequence
(BLAST)

001: MGRKMVKMAR IMNEKTRITT YRKRKECLFK KANEFSTLCG VNTCLIVYGP TRAGDERIDH PELWPKDERK VREIITKYRD TASSSCIKTY SVQECLEKGK
101: IKLEKEKYCP WDNKLEKCSL NELYATFVTV CNKIQEAANR KQTFPDASWS THRDQLGLIG YNQPCLEQHQ LFPMSSMEQN GFAFLPFLNQ MTSTSNTGEV
201: ASFSNVTEPE MTQAMFYGSC SDGQYAPMVQ KTDYMEPVQW GLGNSMFSNV KPFADYPMRF GQVNDLESSG KTPM

Best Arabidopsis Sequence Match ( AT5G55690.1 )
(BLAST)

001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM

Arabidopsis Description

At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.