CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16660
KRH18859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	KRH16660	AT1G77980.1	15805477
AT5G58890.1	KRH18859	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42540	Soybean	nucleus	64.86	66.78
KRH42537	Soybean	nucleus	51.44	58.97
KRG93896	Soybean	nucleus	9.9	32.98
KRH44465	Soybean	nucleus	20.13	28.12
VIT_15s0021g02220.t01	Wine grape	nucleus	26.84	28.09
VIT_15s0021g02250.t01	Wine grape	nucleus	27.16	26.98
PGSC0003DMT400064120	Potato	nucleus	25.56	25.0
KRH37770	Soybean	cytosol	14.7	24.34
Solyc01g103550.1.1	Tomato	nucleus	23.96	24.12
AT5G55690.1	Thale cress	nucleus	21.09	23.83
Bra028965.1-P	Field mustard	mitochondrion, nucleus	20.13	22.99
CDY11987	Canola	mitochondrion, nucleus	20.13	22.99
CDY36759	Canola	mitochondrion, nucleus	20.13	22.99
PGSC0003DMT400071682	Potato	nucleus	21.73	22.74
KRG93950	Soybean	nucleus	19.17	20.27
CDX80329	Canola	nucleus	19.49	20.27
KRH18233	Soybean	nucleus	19.17	20.0
AT5G58890.1	Thale cress	nucleus	18.53	19.73
CDY54181	Canola	nucleus	18.21	18.94
KRG93920	Soybean	mitochondrion	17.25	18.0
KRH47443	Soybean	nucleus	18.21	16.15
KRH12811	Soybean	cytosol	19.49	15.8
KRG93859	Soybean	mitochondrion	17.89	15.73
KRG93897	Soybean	mitochondrion	16.61	14.73
Bra002611.1-P	Field mustard	nucleus	8.95	9.43

Protein Annotations

EntrezGene:102660566	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02003277	EnsemblPlantsGene:GLYMA_05G140000	GO:GO:0000982
GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:K7KQ53	EnsemblPlants:KRH58631
ProteinID:KRH58631	ProteinID:KRH58631.1	InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF176	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0002951B6A	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:33257130..33258071

Molecular Weight (calculated)

36266.4 Da

IEP (calculated)

9.082

GRAVY (calculated)

-0.798

Length

313 amino acids

Sequence
(BLAST)

001: MGRGRIPMEL IQKEKARKKT FDKRKKGLLK KAYEISTLCA VDVGIVIYAP KFLNEPETWP QDQDSREVKR IIQKYQNTTS DRYSKMYNVQ EYFNDRMKKI
101: EGEISKVHKE KIKLMYPTWD DSYNTLGEEQ LRMFVSILDV KLDACNQRMN MLKRDSKGKR ITKSDKTQTL TPCMTSNFMS QTQQLFPSSD NNQVAFYPCQ
201: LSQSSQPSMF HFGQSCMQFM EKNAMVDWAN QVGVGACDPK MGVLKEDGSD KNQNSSPCYN GNMQTLPSQL QYDATFQTLP NQLEQPSGVE LNGFYDSNML
301: QLSQFFNYMH GRK

Best Arabidopsis Sequence Match ( AT5G55690.1 )
(BLAST)

001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM

Arabidopsis Description

At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.