Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P10340_001 | Banana | nucleus | 89.81 | 89.81 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 88.89 | 88.89 |
| KRH59303 | Soybean | nucleus | 82.41 | 82.79 |
| EER88092 | Sorghum | nucleus | 75.93 | 80.79 |
| CDY37814 | Canola | nucleus | 58.33 | 80.77 |
| KRH43152 | Soybean | nucleus | 80.56 | 79.82 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 75.0 | 79.8 |
| AT5G65260.1 | Thale cress | nucleus | 81.02 | 79.55 |
| CDY33970 | Canola | nucleus | 77.31 | 79.15 |
| PGSC0003DMT400041675 | Potato | nucleus | 79.63 | 78.9 |
| AT5G10350.1 | Thale cress | nucleus | 79.17 | 78.8 |
| CDY08805 | Canola | nucleus, plasma membrane | 80.09 | 78.64 |
| Bra024372.1-P | Field mustard | nucleus | 80.09 | 78.64 |
| Solyc11g009090.1.1 | Tomato | nucleus | 79.63 | 78.54 |
| PGSC0003DMT400043273 | Potato | nucleus | 78.24 | 78.24 |
| CDY55162 | Canola | nucleus | 79.63 | 78.18 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 74.54 | 77.03 |
| Os06t0219600-01 | Rice | nucleus | 72.69 | 76.96 |
| KXG30711 | Sorghum | nucleus | 75.46 | 76.89 |
| Os02t0757900-02 | Rice | nucleus | 75.93 | 75.93 |
| TraesCS6A01G316300.1 | Wheat | nucleus | 73.61 | 75.71 |
| HORVU6Hr1G077700.12 | Barley | nucleus | 74.54 | 74.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 71.3 | 74.04 |
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 33.33 | 70.59 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 33.33 | 70.59 |
| TraesCS7A01G177900.1 | Wheat | nucleus | 70.83 | 66.52 |
| TraesCS7D01G179700.1 | Wheat | nucleus | 70.83 | 66.52 |
| VIT_00s0625g00040.t01 | Wine grape | cytosol | 37.5 | 66.39 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 74.54 | 65.45 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 63.43 | 64.62 |
| TraesCS6D01G295600.1 | Wheat | nucleus | 65.28 | 63.51 |
| Zm00001d023775_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 29.17 | 61.16 |
| Zm00001d052198_P002 | Maize | nucleus | 75.0 | 60.9 |
| Zm00001d044869_P001 | Maize | nucleus | 73.15 | 57.88 |
| Zm00001d018112_P004 | Maize | nucleus | 75.93 | 57.54 |
| VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 24.07 | 54.17 |
| Solyc03g094090.2.1 | Tomato | nucleus | 25.0 | 51.43 |
| GSMUA_Achr4P09640_001 | Banana | plastid | 16.2 | 11.99 |
| GSMUA_Achr9P16060_001 | Banana | golgi | 28.7 | 8.72 |
Protein Annotations
| MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | EnsemblPlantsGene:GSMUA_Achr2G22250_001 | EnsemblPlants:GSMUA_Achr2P22250_001 | EnsemblPlants:GSMUA_Achr2T22250_001 | InterPro:IPR000504 | InterPro:IPR012677 |
| UniProt:M0SA66 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43987 | PANTHER:PTHR43987:SF1 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000294920C | SEG:seg |
Description
Polyadenylate-binding protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G22250_001]
Coordinates
chr2:-:21389569..21395381
Molecular Weight (calculated)
24808.2 Da
IEP (calculated)
4.717
GRAVY (calculated)
-0.855
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDEEEHEVY GGEIPDEGDM DADVDMARPD EDAAKLQELD EMKRRLKEME EEAAALREMQ AKVEKEMGSV QDPASAAASQ ASKEEVDSRS VFVGNVDYAC
101: TPEEVQQHFQ SCGTVNRVTI LTDKFGQPKG FAYVEFLEVE AVQEALQLNE SELHGRQIKV AAKRTNVPGM KQFRPRRFSP YMGNPYRRPY MPPYFASPYG
201: YGKFPRYRRP MRFRPF
101: TPEEVQQHFQ SCGTVNRVTI LTDKFGQPKG FAYVEFLEVE AVQEALQLNE SELHGRQIKV AAKRTNVPGM KQFRPRRFSP YMGNPYRRPY MPPYFASPYG
201: YGKFPRYRRP MRFRPF
001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
Arabidopsis Description
PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.