Factsheet for GSMUA_Achr6P17820_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P22250_001
GSMUA_Achr3P21300_001
GSMUA_Achr4P14570_001
GSMUA_Achr6P10340_001
GSMUA_Achr6P35010_001
GSMUA_Achr7P27630_001
GSMUA_Achr9P17150_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	GSMUA_Achr9P17150_001	AT1G17760.1	12379796
AT1G71800.1	GSMUA_Achr9P17150_001	AT1G17760.1	18479511
AT1G71800.1	GSMUA_Achr2P22250_001	AT5G10350.1	18479511
AT1G71800.1	GSMUA_Achr3P21300_001	AT5G10350.1	18479511
AT1G71800.1	GSMUA_Achr6P10340_001	AT5G10350.1	18479511
AT1G71800.1	GSMUA_AchrUn_...	AT5G10350.1	18479511
AT1G71800.1	GSMUA_Achr4P14570_001	AT5G58040.1	18479511
AT1G71800.1	GSMUA_Achr7P27630_001	AT5G58040.1	18479511
AT1G71800.1	GSMUA_Achr6P35010_001	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	45.85	61.33
GSMUA_Achr10P...	Banana	nucleus	62.79	48.84
KXG27890	Sorghum	cytosol	54.82	33.67
Zm00001d004779_P001	Maize	nucleus	54.82	33.6
Os11t0176100-01	Rice	nucleus	55.15	33.54
AT1G71800.1	Thale cress	nucleus	50.83	33.19
TraesCS4D01G091300.1	Wheat	nucleus	53.49	32.86
TraesCS4B01G094500.1	Wheat	nucleus	53.49	32.86
Bra007985.1-P	Field mustard	nucleus	49.17	32.82
CDY03684	Canola	nucleus	49.17	32.82
CDX68301	Canola	cytosol, nucleus, plastid	49.5	32.39
CDY36682	Canola	cytosol, nucleus, plastid	49.5	32.39
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	54.15	30.64
Bra003913.1-P	Field mustard	plastid	49.5	30.6
VIT_18s0001g01800.t01	Wine grape	nucleus	54.15	29.91
PGSC0003DMT400026767	Potato	nucleus	50.5	29.86
Solyc02g069160.2.1	Tomato	nucleus	50.17	29.67
KRH35025	Soybean	nucleus	53.16	29.36
KRG91748	Soybean	nucleus	53.49	29.17
Zm00001d053041_P002	Maize	cytosol	53.82	27.79
CDY37934	Canola	nucleus	49.17	26.33
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.61	24.54
PGSC0003DMT400033572	Potato	plastid	21.26	15.76

Protein Annotations

MapMan:16.2.1.3.2	Gene3D:3.30.70.330	InterPro:CSTF2_hinge	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr6G17820_001
EnsemblPlants:GSMUA_Achr6P17820_001	EnsemblPlants:GSMUA_Achr6T17820_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0T7Y0	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF14327	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TMHMM:TMhelix	UniParc:UPI000296E55B	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G17820_001]

Coordinates

chr6:-:11985697..11996715

Molecular Weight (calculated)

33167.7 Da

IEP (calculated)

5.949

GRAVY (calculated)

-0.110

Length

301 amino acids

Sequence
(BLAST)

001: MAASSGSQHR CVFVGNIPYD ATEDQLKQLC EEVGPVVSFR LVYDRETGKP KGYGFCEYKD EETALSARRN LQGYEINGRQ LRVDFAENDK NSDRNREQGH
101: GGPGLAPSAD VQKQFSGAPV LGDSTLHQPV GLPLAATAAS VMAGALGGAQ ISNAQSVLPG QSGTGSDPLT HYLSRISRHQ LHEILSEMKA LATQNKALAR
201: QLMQASPQLA KALFQVMLNS LMTLFLDLWD DLCLLSAENV LINPNTNLNF QEMLQLKLVY FDLMTRQRSV SFFCILVLNF YVLFFFVYLF ASSGGGDQWM
301: L

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.