Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68301 | Canola | cytosol, nucleus, plastid | 82.43 | 82.61 |
| CDY36682 | Canola | cytosol, nucleus, plastid | 82.43 | 82.61 |
| Bra003913.1-P | Field mustard | plastid | 82.21 | 77.82 |
| Bra007985.1-P | Field mustard | nucleus | 71.8 | 73.39 |
| CDY03684 | Canola | nucleus | 71.8 | 73.39 |
| Solyc09g065080.1.1 | Tomato | cytosol, nucleus, plastid | 29.5 | 60.44 |
| CDY37934 | Canola | nucleus | 70.93 | 58.19 |
| GSMUA_Achr6P17820_001 | Banana | cytosol, golgi, nucleus | 33.19 | 50.83 |
| GSMUA_Achr10P... | Banana | nucleus | 35.36 | 42.12 |
| KRG91748 | Soybean | nucleus | 49.46 | 41.3 |
| KRH35025 | Soybean | nucleus | 48.37 | 40.92 |
| PGSC0003DMT400026767 | Potato | nucleus | 44.25 | 40.08 |
| Solyc02g069160.2.1 | Tomato | nucleus | 44.03 | 39.88 |
| KXG27890 | Sorghum | cytosol | 41.87 | 39.39 |
| VIT_18s0001g01800.t01 | Wine grape | nucleus | 46.2 | 39.08 |
| Zm00001d004779_P001 | Maize | nucleus | 41.21 | 38.7 |
| Os11t0176100-01 | Rice | nucleus | 41.21 | 38.38 |
| TraesCS4D01G091300.1 | Wheat | nucleus | 40.78 | 38.37 |
| TraesCS4B01G094500.1 | Wheat | nucleus | 40.35 | 37.96 |
| HORVU4Hr1G019040.4 | Barley | cytosol, mitochondrion, nucleus, plastid | 40.56 | 35.15 |
| Zm00001d053041_P002 | Maize | cytosol | 40.78 | 32.25 |
| PGSC0003DMT400033572 | Potato | plastid | 24.95 | 28.33 |
| Zm00001d007684_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 11.5 | 24.54 |
Protein Annotations
| MapMan:16.2.1.3.2 | Gene3D:3.30.70.330 | EntrezGene:843510 | ProteinID:AAF43233.1 | ProteinID:AEE35234.1 | EMBL:AF515695 |
| EMBL:AK229116 | ArrayExpress:AT1G71800 | EnsemblPlantsGene:AT1G71800 | RefSeq:AT1G71800 | TAIR:AT1G71800 | RefSeq:AT1G71800-TAIR-G |
| EnsemblPlants:AT1G71800.1 | TAIR:AT1G71800.1 | Unigene:At.22646 | InterPro:CSTF2_hinge | Symbol:CSTF64 | InterPro:CSTF_C |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005847 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0031047 | GO:GO:0031123 | GO:GO:0031124 | GO:GO:0040007 | GO:GO:0042868 | GO:GO:0045892 |
| GO:GO:0048589 | GO:GO:0060968 | GO:GO:0098789 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_177325.2 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF14304 | PFAM:PF14327 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF8 | UniProt:Q9M9G6 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000009D179 | : |
Description
CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
Coordinates
chr1:+:26999374..27002458
Molecular Weight (calculated)
50139.7 Da
IEP (calculated)
9.742
GRAVY (calculated)
-0.553
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.