Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 1
- cytosol 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P22250_001 | Banana | nucleus | 11.99 | 16.2 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 11.99 | 16.2 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 11.3 | 15.28 |
| VIT_04s0008g03040.t01 | Wine grape | nucleus | 23.29 | 15.04 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.93 | 13.94 |
| GSMUA_Achr9P16060_001 | Banana | golgi | 19.52 | 8.02 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P09640_001 | EnsemblPlants:GSMUA_Achr4T09640_001 | EnsemblPlantsGene:GSMUA_Achr4G09640_001 | PANTHER:PTHR45275 | SEG:seg | UniParc:UPI0002953F33 |
| UniProt:M0SMI1 | MapMan:35.2 | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G09640_001]
Coordinates
chr4:-:6966485..6969081
Molecular Weight (calculated)
32947.8 Da
IEP (calculated)
5.207
GRAVY (calculated)
-0.420
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERNPRDTP AGTAAATARA EANVFSSEPR SFKMDRRSPE ASALRDAVSR KLLEFLGSYS DDVLTFLSCL TIQEYIIVLV CNGKHQNQAR DDLEAFLGNE
101: SEKFVAWLWD YLSDQINVSK PQLDSLDIKT KSMGSICDPS SYNRNFSSTN EIEDSERCKD WCPSYSPSVD VHTDVPQEQA CAAYDKVGLT NKNQSGLKLY
201: MKASLMFSPK TFSGGEQRIQ GESQQQKIAE SNSSALPCQP LHVPETEQVA KNSQPIIRGK YSFFLVFLLE NQRQFLLVCF IYYHNVLLYL IQ
101: SEKFVAWLWD YLSDQINVSK PQLDSLDIKT KSMGSICDPS SYNRNFSSTN EIEDSERCKD WCPSYSPSVD VHTDVPQEQA CAAYDKVGLT NKNQSGLKLY
201: MKASLMFSPK TFSGGEQRIQ GESQQQKIAE SNSSALPCQP LHVPETEQVA KNSQPIIRGK YSFFLVFLLE NQRQFLLVCF IYYHNVLLYL IQ
001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND
Arabidopsis Description
RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.