Factsheet for PGSC0003DMT400096271

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g033830.1.1	Tomato	nucleus	53.64	71.68
PGSC0003DMT400067393	Potato	nucleus	37.75	60.64
PGSC0003DMT400067385	Potato	nucleus	60.93	59.35
Solyc06g048380.1.1	Tomato	cytosol	68.21	58.52
Solyc06g033820.1.1	Tomato	cytosol, nucleus, plasma membrane	53.64	41.33
PGSC0003DMT400086843	Potato	nucleus	20.53	37.8
PGSC0003DMT400050265	Potato	nucleus	25.83	27.46
PGSC0003DMT400094997	Potato	nucleus	18.54	17.72

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	UniProt:M1DY31	InterPro:MADS_SRF-like	PFAM:PF00319	EnsemblPlantsGene:PGSC0003DMG400045842
PGSC:PGSC0003DMG400045842	EnsemblPlants:PGSC0003DMT400096271	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF224
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00029645A1	SEG:seg

Description

MIKC MADS-domain protein PPMA10 [Source:PGSC_GENE;Acc:PGSC0003DMG400045842]

Coordinates

chr6:-:35336837..35338244

Molecular Weight (calculated)

16883.1 Da

IEP (calculated)

7.256

GRAVY (calculated)

-0.548

Length

151 amino acids

Sequence
(BLAST)

001: MGRNKIVMKK IEDPGARQQF YSKRKGSIVK KSNELGILCD TDIALLMFSP TGEVTTYSSG KSFEDIMINA MKQPDELNRR SYEPQVEHIN TVEEADAYKQ
101: YLLGAMERIQ RSKAKLLANQ EFLQRNENVA MALVNAENVA AAGNESSCSN A

Best Arabidopsis Sequence Match ( AT2G03060.2 )
(BLAST)

001: MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQVTKT KLSQRF

Arabidopsis Description

AGL30Agamous-like MADS-box protein AGL30 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.