Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- nucleus 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g033830.1.1 | Tomato | nucleus | 34.69 | 60.18 |
| PGSC0003DMT400096271 | Potato | nucleus | 41.33 | 53.64 |
| Solyc06g048380.1.1 | Tomato | cytosol | 44.39 | 49.43 |
| Solyc07g052700.2.1 | Tomato | nucleus | 38.27 | 39.47 |
| Solyc07g052720.2.1 | Tomato | cytosol, nucleus, plastid | 21.94 | 27.56 |
| Solyc04g078300.2.1 | Tomato | nucleus | 25.0 | 14.67 |
| Solyc05g051830.2.1 | Tomato | nucleus | 21.43 | 10.8 |
| Solyc03g115910.1.1 | Tomato | plastid | 19.39 | 9.11 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:K4C4K6 |
| PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF224 | SMART:SM00432 |
| SUPFAM:SSF55455 | EnsemblPlantsGene:Solyc06g033820.1 | EnsemblPlants:Solyc06g033820.1.1 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | TMHMM:TMhelix |
| UniParc:UPI000276594E | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:23167351..23168519
Molecular Weight (calculated)
22658.8 Da
IEP (calculated)
7.252
GRAVY (calculated)
-0.070
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRNKIMRKK IEDPVSRQQF YLKCKDIIVK KSDELGFLCN SNIALLMVSQ NGEVTSYSRG ESFEDIMVKA MNQPVQLNRR SIPNPDEEHL MQSLVQSKSE
101: RGMIEKIAMY DTLLFSSSFI LIYFFVVVLF YMIEKFLLFL LGVFTMLMIG QRASVLSSYE PQVENINTTE EADAYKEYIL GAIERVQRSK VSISKS
101: RGMIEKIAMY DTLLFSSSFI LIYFFVVVLF YMIEKFLLFL LGVFTMLMIG QRASVLSSYE PQVENINTTE EADAYKEYIL GAIERVQRSK VSISKS
001: MGRRKVEIKR IENKSSRQVT FCKRRNGLME KARQLSILCE SSVALIIISA TGRLYSFSSG DSMAKILSRY ELEQADDLKT LDLEEKTLNY LSHKELLETI
101: QCKIEEAKSD NVSIDCLKSL EEQLKTALSV TRARKVYMLL LRYSVT
101: QCKIEEAKSD NVSIDCLKSL EEQLKTALSV TRARKVYMLL LRYSVT
Arabidopsis Description
MAF4K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KGH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.