Factsheet for PGSC0003DMT400067393

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067385	Potato	nucleus	76.6	46.45
PGSC0003DMT400086843	Potato	nucleus	35.11	40.24
PGSC0003DMT400096271	Potato	nucleus	60.64	37.75
PGSC0003DMT400050265	Potato	nucleus	32.98	21.83
PGSC0003DMT400094997	Potato	nucleus	32.98	19.62
Solyc07g052720.2.1	Tomato	cytosol, nucleus, plastid	23.4	14.1

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M1CH65	PFAM:PF00319	EnsemblPlantsGene:PGSC0003DMG403026197
PGSC:PGSC0003DMG403026197	EnsemblPlants:PGSC0003DMT400067393	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF224
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000295CABE	:

Description

MIKC* MADS-box transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG403026197]

Coordinates

chr7:+:47437818..47445958

Molecular Weight (calculated)

10594.8 Da

IEP (calculated)

8.477

GRAVY (calculated)

-0.511

Length

94 amino acids

Sequence
(BLAST)

1: MGRTKLVMKK IEDPTSRQQF YSKRKDTILK KSNELAVLCD VDVGLLMFSP AGEVTSYSSK ESLEDVMLLA MNKAGELNKR SPENPNEQVL SFTH

Best Arabidopsis Sequence Match ( AT1G77980.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK TRIEDVFSRY INLSDQEREN ALVFPDQSRR PDFQSKEYLL
101: RTLQQLKAEN DIALQLTNPT AINSDVEELE HEVYKLQQQL LMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVNQR REHILSQDQL SSYEASALQQ
201: QQSMGGPFGN DVVGGWLTEN GPNEAHLFDA SAHSAMYETL LQGSSSSSNQ NNIMGESNVS NHNGDMFQEW AQAYNSTTAH NPSTLFPPMQ HQHGLVVDPN
301: IEEIEIPVMK KDAQADHEVS DYDIRMPQLS SQ

Arabidopsis Description

AGL66Agamous-like MADS-box protein AGL66 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFC2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.