Factsheet for HORVU1Hr1G054390.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 2
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G226400.1	Wheat	cytosol	96.33	96.33
TraesCS1A01G212900.1	Wheat	cytosol	96.21	96.21
TraesCS1D01G215800.2	Wheat	cytosol	96.33	96.1
Os05t0304600-01	Rice	plastid	79.38	79.1
KXG24148	Sorghum	cytosol	78.91	77.71
Zm00001d041204_P001	Maize	cytosol	77.37	76.82
KXG23911	Sorghum	cytosol, plastid	45.73	70.83
GSMUA_Achr2P05850_001	Banana	cytosol	62.09	63.67
PGSC0003DMT400074322	Potato	cytosol	29.5	56.33
Solyc09g055900.2.1	Tomato	cytosol	30.33	55.41
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	39.34	52.04
VIT_07s0289g00010.t01	Wine grape	cytosol	28.2	49.9
KRH66214	Soybean	cytosol	49.64	48.38
KRH07345	Soybean	cytosol, plastid	49.29	48.32
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	47.87	46.01
HORVU3Hr1G047210.1	Barley	cytosol	11.61	45.16
HORVU5Hr1G055110.2	Barley	mitochondrion	18.72	44.76
HORVU5Hr1G093770.1	Barley	cytosol	45.5	44.5
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	45.38	44.33
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	25.36	43.85
HORVU5Hr1G117110.1	Barley	cytosol	44.55	42.39
HORVU7Hr1G050680.1	Barley	peroxisome	31.64	39.04
HORVU6Hr1G033600.1	Barley	plastid	40.05	37.72
HORVU4Hr1G076570.6	Barley	cytosol, plastid	40.4	37.23
HORVU2Hr1G115980.2	Barley	plastid	38.74	37.07
HORVU5Hr1G001180.1	Barley	plastid	39.69	35.98
PGSC0003DMT400074324	Potato	cytosol	14.69	35.84
Solyc09g055890.2.1	Tomato	cytosol	15.64	35.58
HORVU6Hr1G000510.1	Barley	plastid	39.22	35.52
HORVU2Hr1G115960.1	Barley	plastid	38.63	35.24
HORVU7Hr1G006320.4	Barley	plastid	37.2	33.87

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
EMBL:AK370231	ncoils:Coil	UniProt:F2E260	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	EnsemblPlantsGene:HORVU1Hr1G054390	EnsemblPlants:HORVU1Hr1G054390.4	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF59	SMART:SM00308
SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000200782A	SEG:seg	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:F2E260]

Coordinates

chrchr1H:-:401885356..401889131

Molecular Weight (calculated)

94835.1 Da

IEP (calculated)

8.501

GRAVY (calculated)

-0.418

Length

844 amino acids

Sequence
(BLAST)

001: MQMPFCPKLW DRSPVPPANA VAVNGTVVVA NTFGLSAPGK STTLRLFSGT QIDHETGKGK LSAEAPLRGG KKSRHGKAST TTYHVTFVVD ADFGTPGAVS
101: VRNGNRADRF FLRHVRLELA EDRSIHFECN SWVYPYRKTA SDRLFFVNTS YLPSKTPEAL VLLRDEELRS LRGDGKGERK DWERVYDYDC YNDLGNPDNP
201: EHVRPVVGGT RTHPYPRRCR TGRAISKTDG VTETRKHVIN LDFYIPPDER FSPGKLAEVL KLGVQAVTHF VVPEVRTLIH GNDFKSMELL RKDLYSKPVQ
301: PAVDGQVMEK LKSSVPSHKT YKQVAKAVKE EHPAKFPIPQ VIQNDPEAWR SDEEFAREML AGLNPVAIKR LQTFPPVSSG GKRSSITAEH IKSQLGDVTI
401: ETAMHQKRLY ILDHHDYLMP YLRRINTLGV CIYASRTLLF LKGDGTLKPV VIELSLPSDG EGDTELSRVF LPASHGTDGH LWQLAKAHVS VNDSGYHQLI
501: SHWLFTHAAV EPFIIATRRQ LSAMHPVHKL LEPHFKDTMQ INTLARSILL NAGGILERTM YPGKYAVEMS SAIYGDWRFT EQSLPNDLLK RGIASSSKEP
601: GGLTLHIEDY PYAVDGLDVW HAIDGWVRSY CAHFYHGDKE VVGDAELQAW WHDVRTVGHG DRQGDQACWL ALDSVDHLAQ TLSTLIWIAS ALHAAVNFGQ
701: YAYAGFPPNR PTRCRRFVPL PGSPEMTQLE ADPEKFFLEM VPDRFTATLG LALIEVLSNH TSDEVYLGQR ATSTWTDDGQ LLRLLDRFRE DLRRVEKRVE
801: ERNKDPRLKN RRGPVKVPYT LLFPDVAGQE KGLTGKGIPN SVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.