Factsheet for PGSC0003DMT400074324

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g055890.2.1	Tomato	cytosol	86.13	80.32
VIT_07s0289g00010.t01	Wine grape	cytosol	42.77	31.03
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	42.49	23.04
KXG23911	Sorghum	cytosol, plastid	35.26	22.39
PGSC0003DMT400063461	Potato	cytosol	34.1	17.0
KRH66214	Soybean	cytosol	41.33	16.51
KRH07345	Soybean	cytosol, plastid	40.46	16.26
GSMUA_Achr2P05850_001	Banana	cytosol	37.86	15.92
PGSC0003DMT400063452	Potato	cytosol	34.68	15.02
Zm00001d041204_P001	Maize	cytosol	36.71	14.94
HORVU1Hr1G054390.4	Barley	cytosol	35.84	14.69
TraesCS1B01G226400.1	Wheat	cytosol	35.84	14.69
TraesCS1D01G215800.2	Wheat	cytosol	35.55	14.54
TraesCS1A01G212900.1	Wheat	cytosol	35.26	14.46
PGSC0003DMT400063477	Potato	cytosol	34.97	14.14
KXG24148	Sorghum	cytosol	34.97	14.12
PGSC0003DMT400063446	Potato	cytosol	32.08	13.81
PGSC0003DMT400028158	Potato	cytosol	34.1	13.69
Os05t0304600-01	Rice	plastid	32.95	13.46
PGSC0003DMT400054145	Potato	cytosol	32.95	13.29
PGSC0003DMT400063469	Potato	cytosol	32.08	13.17
PGSC0003DMT400081370	Potato	cytosol	31.79	12.54
PGSC0003DMT400081909	Potato	plastid	28.61	11.01
PGSC0003DMT400058933	Potato	plastid	28.61	10.83
PGSC0003DMT400045047	Potato	cytosol, plastid	26.01	9.89
PGSC0003DMT400020118	Potato	cytosol	18.5	9.24
Solyc09g055900.2.1	Tomato	cytosol	2.89	2.16
PGSC0003DMT400063654	Potato	cytosol	1.16	0.81
PGSC0003DMT400074322	Potato	cytosol	0.87	0.68
PGSC0003DMT400034472	Potato	cytosol	0.29	0.22

Protein Annotations

Gene3D:2.60.60.20	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016702
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M1CTI1
PFAM:PF00305	PFAM:PF01477	EnsemblPlantsGene:PGSC0003DMG400028888	PGSC:PGSC0003DMG400028888	EnsemblPlants:PGSC0003DMT400074324	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00468	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF59
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000295DAEF	:	:

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400028888]

Coordinates

chr9:-:26423571..26424924

Molecular Weight (calculated)

40022.9 Da

IEP (calculated)

9.635

GRAVY (calculated)

-0.605

Length

346 amino acids

Sequence
(BLAST)

001: MIDCLNKFQG SVKAQLSESK KHAESIKGEI IIQHTHAKSG LAKPIRIQLY SLNDSSTGKG KLSQEVHLNH GKHIHNKPNG NTCIKYELTF EADRDFGFPG
101: AFVIWNQHKD KFFLQSLSLQ VEFKQMVHFE CNSWIFPNHL MQKERIFFSN TCYLPSQTPN DLLQLRKQEL DTLRGDGTAG RIREWHRAYD YDFYNDLSDR
201: QRGERPILGG SIHYPYPRRG KTENVKGMMF KIDSCIPPDE RFSPQKQSEF AKKVIQATLH FVVSQGGSVS REVTNQFKSF NEIKELFSGK KSQGVEEWMI
301: KKLEAHLPKE ILKEIGQGIK DYTTKFPMPQ LFAGDAGFMN IRFFFF

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.