Factsheet for PGSC0003DMT400074322

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g055900.2.1	Tomato	cytosol	97.29	93.07
PGSC0003DMT400034472	Potato	cytosol	45.7	45.19
PGSC0003DMT400063654	Potato	cytosol	50.0	45.01
KRH66214	Soybean	cytosol	65.16	33.26
GSMUA_Achr2P05850_001	Banana	cytosol	61.54	33.05
KRH07345	Soybean	cytosol, plastid	64.03	32.87
TraesCS1D01G215800.2	Wheat	cytosol	57.24	29.91
Os05t0304600-01	Rice	plastid	57.24	29.87
TraesCS1B01G226400.1	Wheat	cytosol	57.01	29.86
TraesCS1A01G212900.1	Wheat	cytosol	57.01	29.86
HORVU1Hr1G054390.4	Barley	cytosol	56.33	29.5
KXG24148	Sorghum	cytosol	56.33	29.05
PGSC0003DMT400020118	Potato	cytosol	45.48	29.0
Zm00001d041204_P001	Maize	cytosol	54.75	28.47
PGSC0003DMT400063446	Potato	cytosol	48.19	26.49
PGSC0003DMT400081370	Potato	cytosol	51.58	26.0
PGSC0003DMT400054145	Potato	cytosol	50.23	25.87
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	37.33	25.86
PGSC0003DMT400063477	Potato	cytosol	50.0	25.82
PGSC0003DMT400028158	Potato	cytosol	49.77	25.52
PGSC0003DMT400063469	Potato	cytosol	48.42	25.39
PGSC0003DMT400063452	Potato	cytosol	40.95	22.65
PGSC0003DMT400081909	Potato	plastid	45.02	22.14
PGSC0003DMT400045047	Potato	cytosol, plastid	45.25	21.98
PGSC0003DMT400058933	Potato	plastid	45.25	21.88
PGSC0003DMT400063461	Potato	cytosol	31.22	19.88
KXG23911	Sorghum	cytosol, plastid	19.91	16.15
VIT_07s0289g00010.t01	Wine grape	cytosol	15.61	14.47
PGSC0003DMT400074324	Potato	cytosol	0.68	0.87
Solyc09g055890.2.1	Tomato	cytosol	0.45	0.54

Protein Annotations

Gene3D:1.20.245.10	Gene3D:3.10.450.60	MapMan:50.1.12	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR013819	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_plant
UniProt:M1CTH9	PFAM:PF00305	EnsemblPlantsGene:PGSC0003DMG400028887	PGSC:PGSC0003DMG400028887	EnsemblPlants:PGSC0003DMT400074322	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00081	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF59	SUPFAM:SSF48484
UniParc:UPI00029531E0	:	:	:	:	:

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400028887]

Coordinates

chr9:-:26413980..26416406

Molecular Weight (calculated)

50660.8 Da

IEP (calculated)

7.125

GRAVY (calculated)

-0.315

Length

442 amino acids

Sequence
(BLAST)

001: MNQWRIFILD HHNYLMPFLG KINKNGVCAY ASRTLLFLKD DATLKPLAIE LSLPGLSPGT EIHRVFRPGG NGSEAALWQF AKAHVGVNDS GYQQLISHWL
101: KTHAVVEPFI IATRRQLSVM HPIHRLLDPH FKDTMHINAL ARSTVLKGGG IIEKTLYSGE VSMELSSSLY KEWRFDEQSL PGDLLKRGMA FHNPDCLAGV
201: QLLFEDYPYG TDGLEIWVAT KRWVNDYCLH FYKDDNSLRS DHEIQEWWSE IKKIGHGDKC NETWWYPMTT LSDLVEALTT LIWISSGLHA SVNFGQYEYV
301: GHPLNRPIKC RNFIPMEGTK EFAEFLHDPD KFFLKMLPNR SEITLYMALL EVLSAPTSDE VYLGQQRSPN WIDDVWVKQR FEQFAEELNK VDKRIVERNA
401: DPKLKNRQGP SNIPYKLLRP AVSNVKSCQG ITAIGIPNSI SM

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.