Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 4
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P00600_001 | Banana | nucleus | 62.44 | 51.82 |
| GSMUA_Achr5P05380_001 | Banana | nucleus | 62.44 | 50.2 |
| Os07t0623300-01 | Rice | nucleus | 64.88 | 48.36 |
| Os08t0486200-02 | Rice | nucleus | 60.98 | 43.25 |
| Os03t0374575-01 | Rice | nucleus | 29.27 | 27.65 |
| Os07t0633200-02 | Rice | nucleus | 28.29 | 27.23 |
| Os02t0252100-02 | Rice | nucleus | 30.24 | 23.4 |
| Os12t0572400-01 | Rice | nucleus | 27.8 | 21.67 |
| Os03t0363800-01 | Rice | nucleus | 23.41 | 19.75 |
| Os11t0704700-01 | Rice | nucleus | 25.37 | 10.18 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4333005 | ProteinID:AAT78815.1 | ProteinID:ABF96331.1 | ProteinID:BAF12177.1 |
| ProteinID:BAS84491.1 | ProteinID:EEE59174.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os03g0388000 | EnsemblPlants:Os03t0388000-01 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF40 | UniProt:Q6AVF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00003FE60B | RefSeq:XP_015629145.1 | SEG:seg | : |
Description
Similar to Splicing factor SC35. (Os03t0388000-01);Hypothetical conserved gene. (Os03t0388000-02)
Coordinates
chr3:-:15475307..15478270
Molecular Weight (calculated)
24740.9 Da
IEP (calculated)
10.664
GRAVY (calculated)
-1.496
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRLGRYGPP AVRDSYSLLV LNVSFRTTAD DLLALFDRCG EVLDIRIPRD RRTGDSRGFA FVRYKYEDEA QKAVDKLDGR TVDGRDIMVQ FAKYGPNAER
101: IHKGRIVEEI SKPRGRSRSP SPKRRYRADY RDRGYRDDYR DRHYRDDYQD REYRRSRSIE RYERERYQEK GYRRRSRSIS PDYDRRHRKN GPRDERSPRS
201: RSPLT
101: IHKGRIVEEI SKPRGRSRSP SPKRRYRADY RDRGYRDDYR DRHYRDDYQD REYRRSRSIE RYERERYQEK GYRRRSRSIS PDYDRRHRKN GPRDERSPRS
201: RSPLT
001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
Arabidopsis Description
SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.