Factsheet for PGSC0003DMT400045694

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g074040.2.1	Tomato	nucleus	98.06	98.06
VIT_18s0001g05550.t01	Wine grape	nucleus	79.84	80.16
GSMUA_Achr10P...	Banana	nucleus	69.38	75.53
HORVU2Hr1G029640.1	Barley	mitochondrion	40.31	74.82
PGSC0003DMT400032709	Potato	nucleus	68.99	70.08
KXG36736	Sorghum	nucleus	64.34	66.4
Zm00001d006906_P010	Maize	mitochondrion	64.34	65.87
Zm00001d022189_P002	Maize	nucleus	61.24	62.2
TraesCS2D01G169700.5	Wheat	nucleus	64.73	60.73
KXG39239	Sorghum	nucleus	53.49	58.47
Os07t0623300-01	Rice	nucleus	62.02	58.18
TraesCS2B01G188600.1	Wheat	nucleus, plastid	58.91	55.88
TraesCS2A01G162700.3	Wheat	nucleus	51.16	55.46
HORVU2Hr1G029630.1	Barley	plastid	26.74	50.74
CDX84503	Canola	nucleus	48.84	46.49
PGSC0003DMT400081835	Potato	nucleus	27.52	28.63
CDY43799	Canola	vacuole	34.5	27.55
PGSC0003DMT400010908	Potato	nucleus	27.91	25.71
PGSC0003DMT400016115	Potato	nucleus	24.81	24.06
Zm00001d029380_P002	Maize	cytosol, nucleus, plasma membrane	39.15	23.38

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	ProteinID:ABB29919	ProteinID:ABB29919.1	ncoils:Coil	EMBL:DQ235162
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829
GO:GO:0016020	GO:GO:0016607	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1BI11	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400017719	PGSC:PGSC0003DMG400017719	EnsemblPlants:PGSC0003DMT400045694	PFscan:PS50102	PANTHER:PTHR23147
PANTHER:PTHR23147:SF42	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361
SUPFAM:SSF54928	UniParc:UPI000295EA1B	SEG:seg	:	:	:

Description

Serine/arginine rich splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400017719]

Coordinates

chr4:+:63072775..63077256

Molecular Weight (calculated)

30067.0 Da

IEP (calculated)

12.012

GRAVY (calculated)

-1.633

Length

258 amino acids

Sequence
(BLAST)

001: MSHFGRSGPP DIKDTYSLLV LNVTFRTTAD DLFPLFDKYG KVVDVFIPRD RRTGDSRGFA FVRYKYQDEA QKAVEKLDGR VVDGREIMVR FAKYGPNAER
101: IDKGRILEPV QRTKGRSRSR SPRPRHREHR DKDSRRRSRS RSRSRSKGRY DRDQYRGRDR DNRHRSRSRS PDYHKGRGRG KYDEDRRSRS RSHGRSASPA
201: RRSPSPRRSP SPRRTTPPRD ASPDGRNHKD RSPTPKSISP RGRRAGSRSP LPRSDADD

Best Arabidopsis Sequence Match ( AT5G64200.1 )
(BLAST)

001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE

Arabidopsis Description

SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.