Subcellular Localization
min:
: max
Winner_takes_all: vacuole, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0040g02850.t01 | Wine grape | cytosol, extracellular, mitochondrion, nucleus | 27.05 | 55.0 |
| CDX78183 | Canola | nucleus | 29.51 | 12.72 |
| CDX73550 | Canola | nucleus | 29.51 | 12.68 |
| CDY07586 | Canola | mitochondrion, nucleus | 28.69 | 12.15 |
| CDY52755 | Canola | mitochondrion, nucleus | 28.69 | 12.03 |
| CDX79732 | Canola | nucleus | 26.23 | 10.92 |
| CDY46773 | Canola | nucleus | 27.87 | 10.76 |
| CDY11223 | Canola | nucleus | 22.95 | 10.65 |
| CDX80835 | Canola | nucleus | 22.95 | 10.57 |
| CDY41599 | Canola | nucleus | 23.77 | 10.1 |
| CDY44717 | Canola | nucleus | 23.77 | 9.83 |
| CDX94214 | Canola | cytosol | 10.66 | 6.5 |
| CDX95008 | Canola | nucleus | 15.57 | 5.99 |
| CDY66028 | Canola | cytosol | 11.48 | 5.53 |
| CDX86974 | Canola | nucleus | 10.66 | 4.83 |
| CDY00202 | Canola | nucleus | 10.66 | 4.73 |
| CDX91319 | Canola | nucleus | 11.48 | 4.68 |
| CDX68538 | Canola | nucleus | 10.66 | 4.61 |
| CDX97264 | Canola | nucleus | 11.48 | 4.59 |
| CDY50385 | Canola | nucleus | 11.48 | 4.55 |
| CDY22050 | Canola | nucleus | 11.48 | 4.53 |
| CDY08133 | Canola | cytosol | 10.66 | 4.5 |
| CDY05936 | Canola | nucleus | 10.66 | 4.41 |
| CDY61855 | Canola | nucleus | 15.57 | 3.21 |
Protein Annotations
| EnsemblPlants:CDY45333 | EnsemblPlantsGene:GSBRNA2T00081800001 | GO:A0A078I840 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:RBD_domain_sf | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF21 | ProteinID:CDY45333 | ProteinID:CDY45333.1 | SUPFAM:SSF54928 |
| UniParc:UPI0004EE2499 | UniProt:A0A078I840 | MapMan:35.2 | : | : | : |
Description
BnaC01g30370DBnaC01g30370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I840]
Coordinates
chrLK032621:-:10176..10819
Molecular Weight (calculated)
14687.0 Da
IEP (calculated)
11.335
GRAVY (calculated)
-0.307
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKNNRNYPF NGLKKCNIEL NISIYWPAQY FPYGVKINGL FSISIKGSRV QDLFFESAVH FLLRFWKLIR VTLLLPYRRF KFAALTMPRF DDRYGNTRLY
101: VGRLSSRTRS RDLERLFSRY GR
101: VGRLSSRTRS RDLERLFSRY GR
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP
Arabidopsis Description
RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.