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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra018814.1-P
Bra030819.1-P

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX75527 Canola nucleus 96.68 96.43
Bra010510.1-P Field mustard nucleus 62.35 92.6
AT4G35800.1 Thale cress nucleus 62.38 91.9
GSMUA_Achr1P14900_001 Banana nucleus 34.99 84.49
VIT_18s0001g00860.t01 Wine grape nucleus 57.48 84.07
KRH28855 Soybean nucleus 56.44 83.69
KRH76591 Soybean nucleus 56.33 83.52
Solyc02g083350.2.1 Tomato nucleus 56.48 82.88
PGSC0003DMT400009249 Potato nucleus 56.11 82.65
KRH40807 Soybean nucleus 53.78 82.22
HORVU5Hr1G114340.1 Barley nucleus 25.91 81.25
Zm00001d024583_P003 Maize nucleus 55.04 80.59
TraesCS7B01G202000.2 Wheat nucleus 54.96 80.4
EES13372 Sorghum nucleus 55.0 80.24
TraesCS7D01G297100.1 Wheat nucleus 55.0 80.15
TraesCS7A01G301900.1 Wheat nucleus 54.93 80.04
Solyc02g083230.2.1 Tomato cytosol, nucleus, peroxisome 7.75 79.55
TraesCS2D01G427500.2 Wheat nucleus 43.0 79.2
TraesCS2D01G571500.1 Wheat nucleus 54.04 79.01
TraesCS2B01G622300.1 Wheat nucleus 54.01 78.7
TraesCS2A01G558100.1 Wheat nucleus 53.97 78.69
GSMUA_Achr3P00590_001 Banana nucleus 40.75 78.41
TraesCS5D01G499000.1 Wheat nucleus 52.82 78.2
TraesCS5B01G499000.1 Wheat nucleus 52.31 77.99
HORVU5Hr1G114400.2 Barley nucleus 51.2 77.88
TraesCS5B01G498800.1 Wheat nucleus 52.27 77.72
GSMUA_Achr1P14890_001 Banana cytosol 13.7 77.45
HORVU2Hr1G126750.3 Barley nucleus 54.01 77.28
TraesCS5D01G498900.1 Wheat nucleus 52.42 76.88
TraesCS7D01G182500.1 Wheat cytosol 24.44 76.27
TraesCS7B01G085700.1 Wheat cytosol 24.44 76.27
TraesCS7A01G180700.1 Wheat cytosol 24.33 75.66
Os05t0151000-00 Rice nucleus 50.31 74.0
EES08565 Sorghum nucleus 50.87 73.38
HORVU7Hr1G037130.2 Barley nucleus 24.22 72.09
Bra020267.1-P Field mustard nucleus 16.06 31.75
Bra003294.1-P Field mustard nucleus 14.8 25.38
Bra007345.1-P Field mustard nucleus 14.62 24.15
Bra027611.1-P Field mustard nucleus 10.19 19.13
Bra000162.1-P Field mustard nucleus 10.85 14.28
Bra041010.1-P Field mustard cytosol, plastid 2.36 13.39
Protein Annotations
KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6KEGG:00564+3.1.4.4KEGG:00565+3.1.4.4Gene3D:1.10.132.30Gene3D:1.10.150.390
Gene3D:1.10.274.100Gene3D:1.20.120.1280MapMan:15.1.2.1Gene3D:2.20.25.410Gene3D:2.40.40.20Gene3D:3.30.1360.140
Gene3D:3.30.1490.180Gene3D:3.30.870.10MapMan:5.7.2.4.3EnsemblPlantsGene:Bra011638EnsemblPlants:Bra011638.1EnsemblPlants:Bra011638.1-P
InterPro:C2_domncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824
GO:GO:0003899GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005654GO:GO:0005665GO:GO:0005737GO:GO:0005773GO:GO:0006139GO:GO:0006351
GO:GO:0006366GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009506GO:GO:0009507
GO:GO:0009536GO:GO:0009987GO:GO:0016740GO:GO:0016779InterPro:IPR000008InterPro:IPR001736
InterPro:IPR038120InterPro:IPR038593UniProt:M4D581PFAM:PF00168PFAM:PF00614PFAM:PF00623
PFAM:PF04983PFAM:PF04990PFAM:PF04992PFAM:PF04997PFAM:PF04998PFAM:PF05000
PFAM:PF05001PFAM:PF12357InterPro:PLipase_D/transphosphatidylaseInterPro:PLipase_D_CPRINTS:PR01217ScanProsite:PS00115
PFscan:PS50004PFscan:PS50035PANTHER:PTHR19376PANTHER:PTHR19376:SF37InterPro:RNA_pol_II_repeat_eukInterPro:RNA_pol_N
InterPro:RNA_pol_Rpb1_1InterPro:RNA_pol_Rpb1_3InterPro:RNA_pol_Rpb1_4InterPro:RNA_pol_Rpb1_5InterPro:RNA_pol_Rpb1_6InterPro:RNA_pol_Rpb1_7
InterPro:RNA_pol_Rpb1_7_sfInterPro:RNA_pol_asuInterPro:Rpb1_funnel_sfSMART:SM00155SMART:SM00239SMART:SM00663
SUPFAM:SSF49562SUPFAM:SSF56024SUPFAM:SSF64484UniParc:UPI0002546F5CSEG:seg:
Description
AT4G35800 (E=0.0) NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase
Coordinates
chrA01:+:1311844..1322993
Molecular Weight (calculated)
304111.0 Da
IEP (calculated)
6.572
GRAVY (calculated)
-0.491
Length
2709 amino acids
Sequence
(BLAST)
0001: MSVMHVDHSE TTEKGKPKVG GLSDARLGTI DRKVKCETCM ANMAECPGHF GHLELAKPMY HVGFMKTVLS IMRCVCFNCS KILAHEEEHK FKQAMKIKNP
0101: KNRLKKILDA CKNKTKCADD DNLEDVQDQD MDESGKKIRG GCGAVQPKLS IEGMKMVAEY KNTRKKNDEK DQLPEPAAMK QTLGADRVLS VLKRISDEDC
0201: QLLGFNPKYA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII SEFTQLLQFH IATYFDNELP GQPRATQKSG
0301: RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK ELVDNGPHPP PGKTGAKYII RDDGQRLDLR
0401: YLKKSSDHHL ELGYKVERHL IDGDSVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE MNMHVPQSFE TRAEVLELMM VPKCIVSPQA
0501: NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI NLFRYSAWHS DQETGYITPG DTQVRIERGE
0601: LLAGTLCKKT LGTGNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMAKINE TISSAKTAVK DLIRQFQEKK LDPEPGRTMT
0701: ETFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFEG RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ
0801: EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ KLDSLKMKKS EFDRTFKYEI DDVNWNPTYL
0901: SDEHLEDLKG IRELRDVFDA EYQKLEADRY QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD MHPVEIVDAV DKLQERLLVV PGGDAMSVEA
1001: QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFVQSLVAP GEMIGCVAAQ SIGEPATQMT LNTFHYAGVS AKNVTLGVPR LREIINVAKR
1101: IKTPSLSVYL TPEASRSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDYEFV RSYYEMPDED VSPEKISPWL LRIELNREMM VDKKLSMADI
1201: AEKINLVFDD DLTCIFNDDN AEKLILRIRI MNDEGGKGEG QDESAEDDVF LKKIESNMLT EMALRGIPDI NKVFIKQVRK SKFDEEEGFK TSEEWMLDTE
1301: GVNLLAVMCH EDVDPKRTTS NHLIEIMEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG HLMAITRHGI NRNDTGPLMR CSFEETVDIL
1401: LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFVG MTPGRSPFSG TPYHESIMMT PNYLSTPNVS DAQFSPYVSG
1501: MAFSPSSSPG YSPASPGQSP ASPGYSPTSP YYSPTSPTYS PTSPIYRPTY SPTSPTYNPT SYSPTSPTYS PTSPYYSPTS PTYSPTSPYY SPTSPTYSPA
1601: SPYYSPSSPG SSPTSPSYSP TSPSYYSRTS RSYSPTSPAY KAYSPTSPAY SPTSPSYIAT SPSYSPTSPS YGPTPYSPAS PGYSPTSPSY SPTSPSYGPT
1701: SPSYNPQSAK YSPYLAYSPS DARLSPASPG YSPTSPNYSP TSPSYSPTSP SYSPSSPTHC PSSPYSSGAS PDYSPNAGYS PTLPGYSSSS TGQYTPHEGY
1801: ENDKTGKDAS KDAGHVEKKE ERAFQKHLHS GYLCDTVFLQ QQQTEPLFVR ALGLLLAMAE KVSDDVMLLH GDLDLKIVQA RRLPNMDLFS DRMRRCFTAC
1901: NSCAKPPEDD EDPRNRDGGD RNIRGHRKVI TSDPYVTVVV PQATLARTRV LKNSQDPLWD EHFNISVAHP MPHLEFQVKD DDVFGAQIIG TAKIPVHQIA
2001: SGQRISGWFP VLGASGKPPK KETALYVDMK FTPFHQIEAY RNGIAGDPDR RGVKRTYFPV RKGSKVRLYQ DAHVMDGTLP EVGLDNGKVY KHGKCWEDIC
2101: YAVSEAHHMI YIVGWSVFHK VRLVREPTRK LPRGGDLTLG ELLKYKSEEG VRVLLLVWDD KTSHDKFGIS TPGVMGTHDE ETRKFFKHSS VICVLSPRYA
2201: SKLGLVVGTL FTHHQKCVLV DTQAVGNNRK ITAFIGGIDL CDGRYDTPDH RILHDLDTVF KDDFHNPTFP AATKAPRQPW HDLHCRLDGP AAYDVLINFE
2301: QRWRKATRWK EFSLRLKGKT HWQDDALIRI GRISWILSPV FKFLKDGTSI VPEDDPVVYV SKEDDPENWH AQVFRSIDSG SVKGFPKYED EAEAQNLECA
2401: KRLVVDKSIQ TAYIQTIRSA QHFIYIENQY FLGSSYAWLN YKDAGADNLI PMELALKIVS KIRAKERFAV YVVIPLWPEG DPKSGPVQEI LYWQSQTMQM
2501: MYDVIVRELK AVQSDAHPLD YLNFYCLGKR EQLPENMPAT NGSAVSDSYK FQRFMIYVHA KGMIVDDEYV LMGSANINQR SMAGTKDTEI AMGAYQPHHT
2601: WTNKGRHPRG QVYGYRMSLW AEHLGKTGDE FVEPSDLECV KNVNEIAEGN WKKFTNIEFS ELQGHLIKYP LQVDSDGKVS SLPDYDSFPD VGGKIIGAHS
2701: MALPDTLTT
Best Arabidopsis Sequence Match ( AT4G35790.2 )
(BLAST)
001: MAEKVSEDVM LLHGDLDLKI VKARRLPNMD MFSEHLRRLF TACNACARPT DTDDVDPRDK GEFGDKNIRS HRKVITSDPY VTVVVPQATL ARTRVLKNSQ
101: EPLWDEKFNI SIAHPFAYLE FQVKDDDVFG AQIIGTAKIP VRDIASGERI SGWFPVLGAS GKPPKAETAI FIDMKFTPFD QIHSYRCGIA GDPERRGVRR
201: TYFPVRKGSQ VRLYQDAHVM DGTLPAIGLD NGKVYEHGKC WEDICYAISE AHHMIYIVGW SIFHKIKLVR ETKVPRDKDM TLGELLKYKS QEGVRVLLLV
301: WDDKTSHDKF GIKTPGVMGT HDEETRKFFK HSSVICVLSP RYASSKLGLF KQQVVGTLFT HHQKCVLVDT QAVGNNRKVT AFIGGLDLCD GRYDTPEHRI
401: LHDLDTVFKD DFHNPTFPAG TKAPRQPWHD LHCRIDGPAA YDVLINFEQR WRKATRWKEF SLRLKGKTHW QDDALIRIGR ISWILSPVFK FLKDGTSIIP
501: EDDPCVWVSK EDDPENWHVQ IFRSIDSGSV KGFPKYEDEA EAQHLECAKR LVVDKSIQTA YIQTIRSAQH FIYIENQYFL GSSYAWPSYR DAGADNLIPM
601: ELALKIVSKI RAKERFAVYV VIPLWPEGDP KSGPVQEILY WQSQTMQMMY DVIAKELKAV QSDAHPLDYL NFYCLGKREQ LPDDMPATNG SVVSDSYNFQ
701: RFMIYVHAKG MIVDDEYVLM GSANINQRSM AGTKDTEIAM GAYQPNHTWA HKGRHPRGQV YGYRMSLWAE HLGKTGDEFV EPSDLECLKK VNTISEENWK
801: RFIDPKFSEL QGHLIKYPLQ VDVDGKVSPL PDYETFPDVG GKIIGAHSMA LPDTLTT
Arabidopsis Description
PLDDELTAPhospholipase D delta [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Y0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.