Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0063g00890.t01 | |
| VIT_19s0027g01660.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35800.1 | VIT_03s0063g00890.t01 | AT1G49590.1 | 23524848 |
| AT4G35800.1 | VIT_19s0027g01660.t01 | AT1G53720.1 | 16497658 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28855 | Soybean | nucleus | 91.74 | 92.99 |
| KRH76591 | Soybean | nucleus | 91.2 | 92.45 |
| Solyc02g083350.2.1 | Tomato | nucleus | 91.25 | 91.55 |
| PGSC0003DMT400009249 | Potato | nucleus | 90.82 | 91.46 |
| KRH40807 | Soybean | nucleus | 86.07 | 89.95 |
| Bra010510.1-P | Field mustard | nucleus | 87.58 | 88.93 |
| AT4G35800.1 | Thale cress | nucleus | 88.28 | 88.91 |
| CDY08876 | Canola | nucleus | 73.76 | 84.37 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 7.4 | 83.03 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 11.77 | 82.58 |
| CDY71816 | Canola | cytosol | 12.69 | 82.46 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 16.25 | 76.59 |
| Bra011638.1-P | Field mustard | nucleus | 84.07 | 57.48 |
| CDX69166 | Canola | cytosol | 80.94 | 56.78 |
| CDX75527 | Canola | nucleus | 83.21 | 56.74 |
| VIT_06s0004g03730.t01 | Wine grape | mitochondrion, nucleus, plastid | 5.83 | 32.63 |
| VIT_06s0004g03740.t01 | Wine grape | nucleus | 18.84 | 32.53 |
| VIT_13s0067g03120.t01 | Wine grape | nucleus | 12.63 | 23.49 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 21.44 | 23.48 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 14.74 | 19.05 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| EntrezGene:100264310 | wikigene:100264310 | MapMan:15.1.2.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1360.140 |
| Gene3D:3.30.1490.180 | ProteinID:CCB45411 | ProteinID:CCB45411.1 | ncoils:Coil | UniProt:F6H0D9 | EMBL:FN595227 |
| GO:GO:0001055 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005665 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006366 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | InterPro:IPR038120 | InterPro:IPR038593 | EntrezGene:LOC100264310 |
| wikigene:LOC100264310 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04990 | PFAM:PF04992 | PFAM:PF04997 |
| PFAM:PF04998 | PFAM:PF05000 | PFAM:PF05001 | PRINTS:PR01217 | ScanProsite:PS00115 | PANTHER:PTHR19376 |
| PANTHER:PTHR19376:SF37 | InterPro:RNA_pol_II_repeat_euk | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 |
| InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_Rpb1_6 | InterPro:RNA_pol_Rpb1_7 | InterPro:RNA_pol_Rpb1_7_sf | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf |
| SMART:SM00663 | SUPFAM:SSF64484 | TIGR:TC69008 | UniParc:UPI0002109525 | ArrayExpress:VIT_18s0001g00860 | EnsemblPlantsGene:VIT_18s0001g00860 |
| EnsemblPlants:VIT_18s0001g00860.t01 | unigene:Vvi.7431 | RefSeq:XP_002285900 | RefSeq:XP_002285900.1 | SEG:seg | : |
Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F6H0D9]
Coordinates
chr18:-:1602601..1612336
Molecular Weight (calculated)
206439.0 Da
IEP (calculated)
6.042
GRAVY (calculated)
-0.499
Length
1852 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDMRFPYSPA EVAKVRMVQF GILSPDEIRQ MSVVQIEHSE TTERGKPKPG GLSDPRLGTI DRKMKCETCT ANMAECPGHF GHLELAKPMF HIGFMKTVLS
0101: IMRCVCFNCS KILADEEDHK FKQAQKIRNP KNRLKKILDA CKNKSKCEGG DEIETQALDS DEPVKKSRGG CGAQQPKLTI EGMKMIAEYK IQRKKNDDPE
0201: QLPEPVERKQ QLSAERVLNV LKRISDEDCI LLGLNPKYAR PDWMILQVLP IPPPPVRPSV MMDTSSRSEA SLSDDLTHQL AMIIRHNENL RRQERNGAPA
0301: HIISEFAQLL QFHVATYFDN ELPGQPRATQ RSGRPIKSIC SRLKAKEGRI RGNLMGKRVD FSARTVITPD PTINIDELGV PWSIALNLTY PETVTPYNIE
0401: RLKELVEYGP HPPPGKTGAK YIIREDGQRL DLRYLKKSSD HHLELGYKVE RHLNDGDFVL FNRQPSLHKM SIMGHRIKIM PYSTFRLNLS VTSPYNADFD
0501: GDEMNMHVPQ SFETRAEVLE LMMVPKCIVS PQSNRPVMGI VQDTLLGCRK ITKRDTFIEK DVFMNILMWW EDFDGKIPAP AILKPRPLWT GKQVFNLIIP
0601: KQINLLRTSA WHSESETGFI TPGDTQVRIE KGELLAGTLC KKTLGTSTGS LIHVIWEEVG PDAARKFLGH TQWLVNYWLL QNGFSIGIGD TIADAATMEK
0701: INETISKAKN EVKELIRAAQ ERQLEAEPGR TMMESFENRV NQVLNKARDD AGSSAQKSLS ESNNLKAMVT AGSKGSFINI SQMTACVGQQ NVEGKRIPYG
0801: FIDRTLPHFT KDDYGPESRG FVENSYLRGL TPQEFFFHAM GGREGLIDTA VKTSETGYIQ RRLVKAMEDI MVKYDGTVRN SLGDVIQFLY GEDGMDAVWI
0901: ETQKLDSLKM KKGEFDRVFK YEIDDENWNP SYMLPEHVED LKTIREFRNV FDAEVQKLEA DRFQLGTEIA TTGDNSWPMP VNLKRLIWNA QKTFKVDLRR
1001: PSDMHPMEIV EAVDKLQERL KVVPGDDLIS MEAQKNATLF FNILLRSTFA SKRVLKEYRL TREAFEWVIG EIESRFLQSL VAPGEMIGCV AAQSIGEPAT
1101: QMTLNTFHYA GVSAKNVTLG VPRLREIINV AKKIKTPSLS VYLKPDVSKT KERAKNVQCA LEYTTLRSVT QATEVWYDPD PMSTIIEEDV DFVKSYYEMP
1201: DEEVAPEKIS PWLLRIELNR EMMVDKKLSM ADIAEKINLE FDDDLTCIFN DDNAEKLILR IRIMNDEAPK GELQDESAED DVFLKKIESN MLTEMALRGI
1301: PDINKVFIKS GKVNKFDESE GFKPEVEWML DTEGVNLLAV MCHEDVDARR TTSNHLIEVI EVLGIEAVRR SLLDELRVVI SFDGSYVNYR HLAILCDTMT
1401: YRGHLMAITR HGINRNDTGP MMRCSFEETV DILLDAAVYA ETDFLRGVTE NIMLGQLAPI GTGDCALYLN DQMLQHAIEL QLPSYMEGLD FGMTPSRSPI
1501: TGTPYHDGMM SPNYLLSPNL RLSPITDAQF SPYVGGMAFS PTSSPGYSPS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS
1601: PAYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP VYSPTSPSYS PTSPAYSPTS PAYSPTSPSY SPTSPSYSPT SPSYSPTSPS
1701: YSPTSPSYSP TSPAYSPTSP GYSPTSPSYS PTSPSYSPTS PSYNPSSAKY SPSLAYSPSS PRLSPSSPYS PTSPNYSPTS PSYSPTSPSY SPASPTYSPT
1801: SPYNSGVSPD YSPSSPQYSP SAGYSPSAPG YSPSSTSQYT PQMSNKDNGS PQ
0101: IMRCVCFNCS KILADEEDHK FKQAQKIRNP KNRLKKILDA CKNKSKCEGG DEIETQALDS DEPVKKSRGG CGAQQPKLTI EGMKMIAEYK IQRKKNDDPE
0201: QLPEPVERKQ QLSAERVLNV LKRISDEDCI LLGLNPKYAR PDWMILQVLP IPPPPVRPSV MMDTSSRSEA SLSDDLTHQL AMIIRHNENL RRQERNGAPA
0301: HIISEFAQLL QFHVATYFDN ELPGQPRATQ RSGRPIKSIC SRLKAKEGRI RGNLMGKRVD FSARTVITPD PTINIDELGV PWSIALNLTY PETVTPYNIE
0401: RLKELVEYGP HPPPGKTGAK YIIREDGQRL DLRYLKKSSD HHLELGYKVE RHLNDGDFVL FNRQPSLHKM SIMGHRIKIM PYSTFRLNLS VTSPYNADFD
0501: GDEMNMHVPQ SFETRAEVLE LMMVPKCIVS PQSNRPVMGI VQDTLLGCRK ITKRDTFIEK DVFMNILMWW EDFDGKIPAP AILKPRPLWT GKQVFNLIIP
0601: KQINLLRTSA WHSESETGFI TPGDTQVRIE KGELLAGTLC KKTLGTSTGS LIHVIWEEVG PDAARKFLGH TQWLVNYWLL QNGFSIGIGD TIADAATMEK
0701: INETISKAKN EVKELIRAAQ ERQLEAEPGR TMMESFENRV NQVLNKARDD AGSSAQKSLS ESNNLKAMVT AGSKGSFINI SQMTACVGQQ NVEGKRIPYG
0801: FIDRTLPHFT KDDYGPESRG FVENSYLRGL TPQEFFFHAM GGREGLIDTA VKTSETGYIQ RRLVKAMEDI MVKYDGTVRN SLGDVIQFLY GEDGMDAVWI
0901: ETQKLDSLKM KKGEFDRVFK YEIDDENWNP SYMLPEHVED LKTIREFRNV FDAEVQKLEA DRFQLGTEIA TTGDNSWPMP VNLKRLIWNA QKTFKVDLRR
1001: PSDMHPMEIV EAVDKLQERL KVVPGDDLIS MEAQKNATLF FNILLRSTFA SKRVLKEYRL TREAFEWVIG EIESRFLQSL VAPGEMIGCV AAQSIGEPAT
1101: QMTLNTFHYA GVSAKNVTLG VPRLREIINV AKKIKTPSLS VYLKPDVSKT KERAKNVQCA LEYTTLRSVT QATEVWYDPD PMSTIIEEDV DFVKSYYEMP
1201: DEEVAPEKIS PWLLRIELNR EMMVDKKLSM ADIAEKINLE FDDDLTCIFN DDNAEKLILR IRIMNDEAPK GELQDESAED DVFLKKIESN MLTEMALRGI
1301: PDINKVFIKS GKVNKFDESE GFKPEVEWML DTEGVNLLAV MCHEDVDARR TTSNHLIEVI EVLGIEAVRR SLLDELRVVI SFDGSYVNYR HLAILCDTMT
1401: YRGHLMAITR HGINRNDTGP MMRCSFEETV DILLDAAVYA ETDFLRGVTE NIMLGQLAPI GTGDCALYLN DQMLQHAIEL QLPSYMEGLD FGMTPSRSPI
1501: TGTPYHDGMM SPNYLLSPNL RLSPITDAQF SPYVGGMAFS PTSSPGYSPS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS
1601: PAYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP VYSPTSPSYS PTSPAYSPTS PAYSPTSPSY SPTSPSYSPT SPSYSPTSPS
1701: YSPTSPSYSP TSPAYSPTSP GYSPTSPSYS PTSPSYSPTS PSYNPSSAKY SPSLAYSPSS PRLSPSSPYS PTSPNYSPTS PSYSPTSPSY SPASPTYSPT
1801: SPYNSGVSPD YSPSSPQYSP SAGYSPSAPG YSPSSTSQYT PQMSNKDNGS PQ
0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
Arabidopsis Description
NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.