Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G448000.1 | Wheat | nucleus | 99.71 | 99.71 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 99.57 | 99.57 |
| HORVU6Hr1G027050.1 | Barley | nucleus | 96.49 | 94.46 |
| TraesCS1A01G114600.1 | Wheat | mitochondrion | 44.52 | 86.61 |
| Os04t0492300-01 | Rice | nucleus | 84.73 | 85.47 |
| EES11045 | Sorghum | nucleus | 81.79 | 82.03 |
| TraesCS1A01G114500.1 | Wheat | nucleus | 40.57 | 81.67 |
| Zm00001d003203_P003 | Maize | cytosol | 81.22 | 81.28 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 74.27 | 65.36 |
| VIT_06s0004g03730.t01 | Wine grape | mitochondrion, nucleus, plastid | 15.2 | 64.05 |
| VIT_06s0004g03740.t01 | Wine grape | nucleus | 48.67 | 63.28 |
| Solyc11g072730.1.1 | Tomato | nucleus | 62.51 | 62.73 |
| KRG88695 | Soybean | nucleus | 61.22 | 61.39 |
| CDY09230 | Canola | nucleus | 58.28 | 59.34 |
| Bra020267.1-P | Field mustard | nucleus | 58.28 | 59.34 |
| AT5G60040.2 | Thale cress | cytosol | 58.49 | 58.66 |
| TraesCS7A01G180700.1 | Wheat | cytosol | 20.93 | 33.52 |
| TraesCS2A01G558100.1 | Wheat | nucleus | 33.76 | 25.35 |
| TraesCS7A01G301900.1 | Wheat | nucleus | 33.76 | 25.34 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 26.24 | 22.11 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 17.42 | 17.05 |
| TraesCS3A01G513100.1 | Wheat | plastid | 15.77 | 13.28 |
| TraesCS6A01G123800.1 | Wheat | nucleus | 17.56 | 12.51 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.3.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR038120 |
| PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 |
| PANTHER:PTHR19376:SF32 | InterPro:RNAP_III_RPC1_N | InterPro:RNAP_III_Rpc1_C | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 |
| InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 |
| EnsemblPlantsGene:TraesCS3A01G455500 | EnsemblPlants:TraesCS3A01G455500.1 | TIGR:cd02583 | TIGR:cd02736 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:-:693157510..693170075
Molecular Weight (calculated)
155117.0 Da
IEP (calculated)
9.057
GRAVY (calculated)
-0.245
Length
1395 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLRQEEKLRC TKEPFIEDVG TRRIKSMRFS MFSGKEIRQS AEAQVWNNRI YEPNMKPAPN GLLDTRMGAA NKQGECGTCH GSYTECPGHF GYLKLALPVF
0101: NVGFFNNILD VVKCICKGCS RVLLVEKDRR EFLKKMRQPR AEPLVKFALM KKVRDKCKLS RCPWCGFING VAKKGRMGLV IVHDCSKTLD GSTEELRSAL
0201: SHKKEKLAIT SIHTLDPATI LSLFRRMIDE DCELLNLGDR PEKLIITEIA VPPVPIRPSV FVGGGGGRMS NEDSITCILK NIVNTNSILK GTLQSGEPLA
0301: KCFDCWQHLQ LQVVEYINSD APCLIDSQHR GLIQRLKGKT GRFRGNLSGK RTEYTGRTVI SPDPNLRITE VAIPILMARV LTYPERVSYY NIEKLRQCIR
0401: NGPHKHPGAN FILQPDGTKL HLKYCDRRIA ARDLKYGCIV ERHLEDGDIV LFNRQPSLHR MSIMSHRARI MPWRTLRFNE SVCNPYNADF DGDEMNLHVP
0501: QTEEARTEAL MLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDSFYD RSSFTLLCSY LGDAMENIDL PTPALIKPIE LWTGKQLFSV LVRPNAFTKV
0601: YLNLGVREKI CTKKCALTVE DKTSEAVHDA MCPNDGFVYF RNSELLSGQV GKKTLGNGNN EGMFSVLIRD YNSHAAASCM NRLAKFSARF IGNHGFSIGV
0701: DDVQPGESLN EKKGKTIGEG YQECHELIAQ YSKGALKPQP GCSRAQTLEA RISGVLNKLR DTAGDHCMST LHWRNSPLIM SQCGSKGSPI NISQMVVCVG
0801: QQSVGGRRAP NGFIDRTLPH FPINSKTPAA KGFVANSFYT GLTATEFFFH TMGGREGLVD TAVKTAETGY MSRRLMKGLE DLSVFYDQTV RNASGGIVQF
0901: VYGDDGMDPV KMEGKGGNPL NLDQLFMKVM ATCPQRGHET LSPEAISQML NDKLSEQDPS AGGCSDRFKE LLTKFVGNRI KMLRNTRRAL HLDEDHVGRK
1001: DSSIEECVAA NISGISAKQL QVFLDTCLSR YHSKIIEAGA SIGAIGAQSI GEPGTQMTLK TFHFAGVASM NVTLGVPRIK EIINAAKKIS TPIITAELLS
1101: GQDESFGVKV KRCIEKVVLG EVAAAIKIVL KSSQPNLVVK LDMQRIEAQG YEGINADSVQ LSIINYPKLK LKSQHVRVID EAKLRIYPDG TDRSKLQFEL
1201: HNLKSMLPKV IVKGIPTVER AVVNPVKGRD KTIERYNLLV EGTNLLAVLG APGVDAMKTK SNHIMEVNQT LGIEAARRSI IDEIQYTFES NNMIIDLRHM
1301: MLLADLMTYK GEVLGITRYG IAKMKSSVLM LASFEKTSEH LFNASYAGRE DQIDGVSECI IMGIPMQLGT GILKVRQRLE SLPEFKYQPA PIMSS
0101: NVGFFNNILD VVKCICKGCS RVLLVEKDRR EFLKKMRQPR AEPLVKFALM KKVRDKCKLS RCPWCGFING VAKKGRMGLV IVHDCSKTLD GSTEELRSAL
0201: SHKKEKLAIT SIHTLDPATI LSLFRRMIDE DCELLNLGDR PEKLIITEIA VPPVPIRPSV FVGGGGGRMS NEDSITCILK NIVNTNSILK GTLQSGEPLA
0301: KCFDCWQHLQ LQVVEYINSD APCLIDSQHR GLIQRLKGKT GRFRGNLSGK RTEYTGRTVI SPDPNLRITE VAIPILMARV LTYPERVSYY NIEKLRQCIR
0401: NGPHKHPGAN FILQPDGTKL HLKYCDRRIA ARDLKYGCIV ERHLEDGDIV LFNRQPSLHR MSIMSHRARI MPWRTLRFNE SVCNPYNADF DGDEMNLHVP
0501: QTEEARTEAL MLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDSFYD RSSFTLLCSY LGDAMENIDL PTPALIKPIE LWTGKQLFSV LVRPNAFTKV
0601: YLNLGVREKI CTKKCALTVE DKTSEAVHDA MCPNDGFVYF RNSELLSGQV GKKTLGNGNN EGMFSVLIRD YNSHAAASCM NRLAKFSARF IGNHGFSIGV
0701: DDVQPGESLN EKKGKTIGEG YQECHELIAQ YSKGALKPQP GCSRAQTLEA RISGVLNKLR DTAGDHCMST LHWRNSPLIM SQCGSKGSPI NISQMVVCVG
0801: QQSVGGRRAP NGFIDRTLPH FPINSKTPAA KGFVANSFYT GLTATEFFFH TMGGREGLVD TAVKTAETGY MSRRLMKGLE DLSVFYDQTV RNASGGIVQF
0901: VYGDDGMDPV KMEGKGGNPL NLDQLFMKVM ATCPQRGHET LSPEAISQML NDKLSEQDPS AGGCSDRFKE LLTKFVGNRI KMLRNTRRAL HLDEDHVGRK
1001: DSSIEECVAA NISGISAKQL QVFLDTCLSR YHSKIIEAGA SIGAIGAQSI GEPGTQMTLK TFHFAGVASM NVTLGVPRIK EIINAAKKIS TPIITAELLS
1101: GQDESFGVKV KRCIEKVVLG EVAAAIKIVL KSSQPNLVVK LDMQRIEAQG YEGINADSVQ LSIINYPKLK LKSQHVRVID EAKLRIYPDG TDRSKLQFEL
1201: HNLKSMLPKV IVKGIPTVER AVVNPVKGRD KTIERYNLLV EGTNLLAVLG APGVDAMKTK SNHIMEVNQT LGIEAARRSI IDEIQYTFES NNMIIDLRHM
1301: MLLADLMTYK GEVLGITRYG IAKMKSSVLM LASFEKTSEH LFNASYAGRE DQIDGVSECI IMGIPMQLGT GILKVRQRLE SLPEFKYQPA PIMSS
0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
Arabidopsis Description
NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.