Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22455 | Sorghum | nucleus | 89.17 | 87.01 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 63.37 | 64.63 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 62.9 | 64.23 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 63.2 | 64.11 |
| Os06t0612200-01 | Rice | nucleus | 8.93 | 63.71 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 54.32 | 61.28 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 63.55 | 60.4 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 55.5 | 55.44 |
| CDY65464 | Canola | nucleus | 28.05 | 50.59 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 50.3 | 50.27 |
| CDX67702 | Canola | nucleus | 43.55 | 48.77 |
| KRH33046 | Soybean | nucleus | 47.57 | 48.7 |
| Solyc10g080350.1.1 | Tomato | nucleus | 48.11 | 48.48 |
| CDY06084 | Canola | nucleus | 43.49 | 48.32 |
| KRH71957 | Soybean | nucleus | 36.69 | 48.14 |
| CDX72007 | Canola | nucleus | 43.67 | 48.08 |
| Bra003294.1-P | Field mustard | nucleus | 44.38 | 47.47 |
| AT3G57660.1 | Thale cress | nucleus | 46.63 | 47.19 |
| Bra007345.1-P | Field mustard | nucleus | 45.27 | 46.65 |
| CDY65462 | Canola | nucleus | 9.64 | 45.53 |
| Zm00001d003203_P003 | Maize | cytosol | 23.14 | 28.05 |
| Zm00001d024583_P003 | Maize | nucleus | 23.61 | 21.57 |
| Zm00001d031457_P009 | Maize | nucleus | 13.02 | 20.22 |
| Zm00001d039307_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 6.86 | 19.43 |
| Zm00001d053872_P021 | Maize | nucleus | 15.5 | 13.44 |
| Zm00001d031459_P001 | Maize | cytosol | 1.83 | 9.34 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| EntrezGene:100279825 | MapMan:15.1.1.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | UniProt:A0A1D6K232 |
| InterPro:DNA-dir_RNA_pol1_lsu | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009506 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | InterPro:IPR038120 | ProteinID:ONL97766.1 | PFAM:PF00623 |
| PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF11 |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI0004DE8991 | EnsemblPlantsGene:Zm00001d029055 | EnsemblPlants:Zm00001d029055_P010 |
| EnsemblPlants:Zm00001d029055_T010 | SEG:seg | : | : | : | : |
Description
DNA-directed RNA polymerase I subunit 1
Coordinates
chr1:-:56383296..56404974
Molecular Weight (calculated)
188835.0 Da
IEP (calculated)
6.694
GRAVY (calculated)
-0.513
Length
1690 amino acids
Sequence
(BLAST)
(BLAST)
0001: MADGQHIQAA SEEVDSIHFS FYSDDEIKRI SIKKITKSER LDAKNLPVPG GLLDPAMGPI NDIDICKSCG QHSVRCPGHF GHIELAKPLF NPLLFMSLKN
0101: LLHVTCFHCH KFRLNKEQVD RYVNELELLV KGDIVCAKNL EDSVEEAYLS KEDENMNKTT SGDNSSSVKD KKTWTSIQLK EVLSIFSKIM KKRQKKCAKC
0201: DMKSPTISSP IFGWLVKDTK ASAVRTNAIA DFKLKGDGDI HNSGETGVSG LEEESSSPGM VSKDSINEVR GLSDDTIKEL VASSGKKHLL PTEVESILKD
0301: LWKNEARFCM LLCDFQKNMS SEPEKRRGYE MFFLSSLLVA PNRFRPSTSS SLGIMEHPQS VLLSKVQESN LALQHNNASS NHMDVLQRWM DLQRSVNVLY
0401: DSSKGLARSE KNAHGIRQLL EKKEGILRQK MMGKRVNYAC RSVISPDPYL AVNEIGIPPV FATRLTYPEK VTPWNTKRLQ EAIRNGADIH PGATHYRDNN
0501: SMYKLQAVPA KRRSIAKMLP ASRGSICQPG RDPNCEFESK VVYRHLQDGD IVLVNRQPTL HKPSMMAHFV RVLPGEKTLR MHYANCSTYN ADFDGDEMNV
0601: HVPQDEISRA EAMNIVDANK QYIGPRSGDA VRGLIQDHIV GAVLLTKPDT LLSREEYSQL VFGSCVPSSN CGSHHPAKVS AIEDYDTLEL VHPAIWKPRP
0701: LWTGKQVITT ILNHLTKGCP PFTVEQKGKI PKEYLKEDPS AQKEKEDPSA RKEAHSAKKG KREDPSAQKE KDSSVNKEKQ EKIQKQKQKD RSELVLYIHN
0801: NELIKGIIDK AQFGKYGIVH TVHELYGAYT AGILLSTFSR LFTLFLQLHG FTCGVDDLLL LPEKDKLRSK ILSGSEVRSN EVHWKFTGAD EDHKGDLVKL
0901: HMEVEKAVRS NGESDTATLD NDMKNALNGI TTDVNKILFP DGLQKPFPGN CLSLMTTTGA KGGPVNMNQI SSLLGQQELE GKRVPRMVSG KTLPCFPPWD
1001: ISSRAGGFIS DRFLTGLRPQ EYYFHCMAGR EGLVDTAVKT SRSGYLQRCL IKCLESLKVS YDHTVRDADG SIVQFCYGED GVDVLKTSFL NEFKELADNR
1101: KAVLAKLGGC SKDPTLSKCN GYITELPPKL IDKAEEFLKH SKECCRYNIE AKELKELLKV KFLSSLVDPG EAVGVVAAQS IGEPSTQMTL NTFHLAGRGD
1201: MNVTLGIPRL KEILMTASDN IRTPVMKCPL LEHISEDDAK MVVAKLRRVR VADVVEKIEV CTVPFYNSNG RVSTLYKLQM KLYPQDQLES GLTIDECQAT
1301: LRTVFVEAME HAIEKHLDLL YKINEIRAVK IEDTEGSLLN GDEESQSRHA DGGDTGTSDD DDQNDNDVDL GTDAEKMKRQ EKDEMEYDDD TETEEGMGSE
1401: SEESDEDPAE SGDDSQEADK EHTISKSETT SVDDLPYSVK KGKKSKDDRG TAKLEEKNQN EGRLDDQKQG QIKKRRKKLK HTIHVESSDL DFEIHYAFHD
1501: EPHILLAQIA KKIARTILVK ACNNIDHCKI VKPMHNHTRL ETAGVNFEVV WNLSEYISVN DITSNDIHAM LKTYGVEAAR GTIIKEVSGV FEPYGINVDM
1601: RHLSLIADFM TLDGGYRPMN RLGIGQFSTS PFGKMTFETA TKFIVDAATH GEADFLECPS ASVCLGKPPK VGTGIFGLLQ NLELEQPKNI
0101: LLHVTCFHCH KFRLNKEQVD RYVNELELLV KGDIVCAKNL EDSVEEAYLS KEDENMNKTT SGDNSSSVKD KKTWTSIQLK EVLSIFSKIM KKRQKKCAKC
0201: DMKSPTISSP IFGWLVKDTK ASAVRTNAIA DFKLKGDGDI HNSGETGVSG LEEESSSPGM VSKDSINEVR GLSDDTIKEL VASSGKKHLL PTEVESILKD
0301: LWKNEARFCM LLCDFQKNMS SEPEKRRGYE MFFLSSLLVA PNRFRPSTSS SLGIMEHPQS VLLSKVQESN LALQHNNASS NHMDVLQRWM DLQRSVNVLY
0401: DSSKGLARSE KNAHGIRQLL EKKEGILRQK MMGKRVNYAC RSVISPDPYL AVNEIGIPPV FATRLTYPEK VTPWNTKRLQ EAIRNGADIH PGATHYRDNN
0501: SMYKLQAVPA KRRSIAKMLP ASRGSICQPG RDPNCEFESK VVYRHLQDGD IVLVNRQPTL HKPSMMAHFV RVLPGEKTLR MHYANCSTYN ADFDGDEMNV
0601: HVPQDEISRA EAMNIVDANK QYIGPRSGDA VRGLIQDHIV GAVLLTKPDT LLSREEYSQL VFGSCVPSSN CGSHHPAKVS AIEDYDTLEL VHPAIWKPRP
0701: LWTGKQVITT ILNHLTKGCP PFTVEQKGKI PKEYLKEDPS AQKEKEDPSA RKEAHSAKKG KREDPSAQKE KDSSVNKEKQ EKIQKQKQKD RSELVLYIHN
0801: NELIKGIIDK AQFGKYGIVH TVHELYGAYT AGILLSTFSR LFTLFLQLHG FTCGVDDLLL LPEKDKLRSK ILSGSEVRSN EVHWKFTGAD EDHKGDLVKL
0901: HMEVEKAVRS NGESDTATLD NDMKNALNGI TTDVNKILFP DGLQKPFPGN CLSLMTTTGA KGGPVNMNQI SSLLGQQELE GKRVPRMVSG KTLPCFPPWD
1001: ISSRAGGFIS DRFLTGLRPQ EYYFHCMAGR EGLVDTAVKT SRSGYLQRCL IKCLESLKVS YDHTVRDADG SIVQFCYGED GVDVLKTSFL NEFKELADNR
1101: KAVLAKLGGC SKDPTLSKCN GYITELPPKL IDKAEEFLKH SKECCRYNIE AKELKELLKV KFLSSLVDPG EAVGVVAAQS IGEPSTQMTL NTFHLAGRGD
1201: MNVTLGIPRL KEILMTASDN IRTPVMKCPL LEHISEDDAK MVVAKLRRVR VADVVEKIEV CTVPFYNSNG RVSTLYKLQM KLYPQDQLES GLTIDECQAT
1301: LRTVFVEAME HAIEKHLDLL YKINEIRAVK IEDTEGSLLN GDEESQSRHA DGGDTGTSDD DDQNDNDVDL GTDAEKMKRQ EKDEMEYDDD TETEEGMGSE
1401: SEESDEDPAE SGDDSQEADK EHTISKSETT SVDDLPYSVK KGKKSKDDRG TAKLEEKNQN EGRLDDQKQG QIKKRRKKLK HTIHVESSDL DFEIHYAFHD
1501: EPHILLAQIA KKIARTILVK ACNNIDHCKI VKPMHNHTRL ETAGVNFEVV WNLSEYISVN DITSNDIHAM LKTYGVEAAR GTIIKEVSGV FEPYGINVDM
1601: RHLSLIADFM TLDGGYRPMN RLGIGQFSTS PFGKMTFETA TKFIVDAATH GEADFLECPS ASVCLGKPPK VGTGIFGLLQ NLELEQPKNI
0001: MAHAQTTEGA SQVVESVRFS FMTEQDVRKH SFLKVTSPIL HDNVGNPFPG GLYDLKLGPK DDKQACNSCG QLKLACPGHC GHIELVFPIY HPLLFNLLFN
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.