Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65464 | Canola | nucleus | 58.05 | 93.49 |
| Bra003294.1-P | Field mustard | nucleus | 94.96 | 90.7 |
| CDY65462 | Canola | nucleus | 20.68 | 87.15 |
| CDY06084 | Canola | nucleus | 78.33 | 77.71 |
| CDX72007 | Canola | nucleus | 78.33 | 77.0 |
| AT3G57660.1 | Thale cress | nucleus | 79.52 | 71.86 |
| KRH33046 | Soybean | nucleus | 57.79 | 52.82 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 58.45 | 52.16 |
| KRH71957 | Soybean | nucleus | 43.94 | 51.48 |
| Solyc10g080350.1.1 | Tomato | nucleus | 54.21 | 48.78 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 47.45 | 47.8 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 48.84 | 43.56 |
| Zm00001d029055_P010 | Maize | nucleus | 48.77 | 43.55 |
| KXG22455 | Sorghum | nucleus | 49.24 | 42.9 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 46.12 | 42.0 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 46.06 | 41.99 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 46.26 | 41.9 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 46.06 | 39.09 |
| Os06t0612200-01 | Rice | nucleus | 6.1 | 38.82 |
| CDY09230 | Canola | nucleus | 24.59 | 27.08 |
| CDY71816 | Canola | cytosol | 3.98 | 21.05 |
| CDY50743 | Canola | nucleus | 10.6 | 19.61 |
| CDY08876 | Canola | nucleus | 20.94 | 19.52 |
| CDY49206 | Canola | nucleus | 15.37 | 15.89 |
| CDX93859 | Canola | nucleus | 15.18 | 15.83 |
| CDY32191 | Canola | nucleus | 15.04 | 15.72 |
| CDX69166 | Canola | cytosol | 26.24 | 15.0 |
| CDX75527 | Canola | nucleus | 25.84 | 14.36 |
| CDY60335 | Canola | nucleus | 15.31 | 12.36 |
| CDY07630 | Canola | nucleus | 12.19 | 8.03 |
| CDY68589 | Canola | cytosol | 2.78 | 7.88 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.1.1 |
| Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | Gene3D:3.30.70.2850 | GO:A0A078BU22 | EnsemblPlants:CDX67702 |
| ProteinID:CDX67702 | ProteinID:CDX67702.1 | InterPro:DNA-dir_RNA_pol1_lsu | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00098881001 | InterPro:IPR038120 | PFAM:PF00623 |
| PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF11 |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI0004EDD2E5 | SEG:seg | : |
Description
BnaA07g17420D
Coordinates
chrLK031787:+:1859029..1866709
Molecular Weight (calculated)
170063.0 Da
IEP (calculated)
6.574
GRAVY (calculated)
-0.514
Length
1509 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTEQDVRNHS VMKVTNPVLL DTVERPVPGG LYDPLMGPLD DKTPCKTCSR ISLFCPGHCG HIELVYPIYH PLLFNLLYTF LQRTCFFCHH FMKWSEVDGC
0101: VSQLKVIIKG DIVAAKKFGS EATESSEECE DSDIRKQRWT SFQFAEVTDL LKKTLGLKSW KCGYCGKKAV ILEKPMFGWV RKEEEKATDN GDNVIREIKV
0201: KNSENIVESD DDSAIDEQSE VEDEGAKKKR GKSSKAAKEF KEHKKKTKIN VLPSEVREIL KDLWRNHPEF CSFIGDFWQS GSEKNDYSMF FLESILVPPT
0301: KFRPPTKGGD SVMEHPQTAG LNKVLESNIA LGNARTNQLE KSKIVSRWMD LQESVNVLYD SKTSSVKSQR EQGTGICQVL EKKEGLFRQN IMGKRVNHAC
0401: RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR KAIINGPDIH PGATQYSDKV STMKLPSSRK ARIAIANKLF SSRGVTTKLG KTCDINLECK
0501: TVYRHMHDGD VVLVNRQPTL HKPSIMAHIV RVLKGEKTLR LHYANCSTYN ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGDP LRALIQDHIV
0601: SSVLLTKGDT FMDRDEFNQL LFSSGVTDMV LSSFSGRSGK KVTQSASNTE LLTVTPAILK PVPLWTGKQV ITSVLNEITK GHPPFSLEKS TKLPVDFFKC
0701: RTRESNKNKS WKHDFDEDKL LIRKNEFVRG VIDKAQFADY GLVHTVHELY GSNAAGNLLS VFSRLFTVFL QIHGFTCGVD DLIILKDVDE ERTKQLQECE
0801: GVGEKVLRKT FGIDVNAQID PQDMKSSIER ILYEDGEPAL ASLDRRIVSE LNKCSGKGVM NDLLSDGLLK TPGRNCISLM TISGAKGSKV NFQQISSHLG
0901: QQDLEGKRVP RMVSGKTLPC FHPWDWSPRA GGFISDRFLS GLKPQEYYFH CMAGREGLVD TAVKTSRSGY LQRCLMKNLE SLKVNYDCTV RDADGSIIQF
1001: QYGEDGVDVH RSSFIEKFKE LTLNQDMILE TCSEDMLSGS NSYITDLPIT LKKRAEKFVE SMPMDERIAS KMVRQEDLLK LVKSKYFASL AQPGEPVGVL
1101: AAQSVGEPST QMTLNTFHLA GRGEMNVTLG IPRLQEILMT ASANIKTPIM TCPLLKGKTK DDASHITDKL RKITVADIIK KHYPKHTDIT DEDWQETMTV
1201: RYLRKLEDAI QKHMTMLCRI RGIKVKKVTC PKAGNDTRND DSASGKQTQD DDDDSASGKQ TQDDDDDDDD DDDDDDDDDD DDDDDDDSAK KRKKQAADED
1301: YEESSEDENK EPLERFVGHK KDRHIFVECK GETFEVHFKF LSKQPHMLLA PVAQKTAQKV YIQNYGRIER CTLANCEDIS NEEKKAWPAL HASGVDFSDI
1401: WEFQDKLDVR EINHVFKSYG ISVSFRHLNL IADYMTFSGG YRPMSRFGGI AESTSPFCRM TFETATKFIV QAATYGEVDR LETPSARICL GLPALSGTGG
1501: FDLLQRIEV
0101: VSQLKVIIKG DIVAAKKFGS EATESSEECE DSDIRKQRWT SFQFAEVTDL LKKTLGLKSW KCGYCGKKAV ILEKPMFGWV RKEEEKATDN GDNVIREIKV
0201: KNSENIVESD DDSAIDEQSE VEDEGAKKKR GKSSKAAKEF KEHKKKTKIN VLPSEVREIL KDLWRNHPEF CSFIGDFWQS GSEKNDYSMF FLESILVPPT
0301: KFRPPTKGGD SVMEHPQTAG LNKVLESNIA LGNARTNQLE KSKIVSRWMD LQESVNVLYD SKTSSVKSQR EQGTGICQVL EKKEGLFRQN IMGKRVNHAC
0401: RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR KAIINGPDIH PGATQYSDKV STMKLPSSRK ARIAIANKLF SSRGVTTKLG KTCDINLECK
0501: TVYRHMHDGD VVLVNRQPTL HKPSIMAHIV RVLKGEKTLR LHYANCSTYN ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGDP LRALIQDHIV
0601: SSVLLTKGDT FMDRDEFNQL LFSSGVTDMV LSSFSGRSGK KVTQSASNTE LLTVTPAILK PVPLWTGKQV ITSVLNEITK GHPPFSLEKS TKLPVDFFKC
0701: RTRESNKNKS WKHDFDEDKL LIRKNEFVRG VIDKAQFADY GLVHTVHELY GSNAAGNLLS VFSRLFTVFL QIHGFTCGVD DLIILKDVDE ERTKQLQECE
0801: GVGEKVLRKT FGIDVNAQID PQDMKSSIER ILYEDGEPAL ASLDRRIVSE LNKCSGKGVM NDLLSDGLLK TPGRNCISLM TISGAKGSKV NFQQISSHLG
0901: QQDLEGKRVP RMVSGKTLPC FHPWDWSPRA GGFISDRFLS GLKPQEYYFH CMAGREGLVD TAVKTSRSGY LQRCLMKNLE SLKVNYDCTV RDADGSIIQF
1001: QYGEDGVDVH RSSFIEKFKE LTLNQDMILE TCSEDMLSGS NSYITDLPIT LKKRAEKFVE SMPMDERIAS KMVRQEDLLK LVKSKYFASL AQPGEPVGVL
1101: AAQSVGEPST QMTLNTFHLA GRGEMNVTLG IPRLQEILMT ASANIKTPIM TCPLLKGKTK DDASHITDKL RKITVADIIK KHYPKHTDIT DEDWQETMTV
1201: RYLRKLEDAI QKHMTMLCRI RGIKVKKVTC PKAGNDTRND DSASGKQTQD DDDDSASGKQ TQDDDDDDDD DDDDDDDDDD DDDDDDDSAK KRKKQAADED
1301: YEESSEDENK EPLERFVGHK KDRHIFVECK GETFEVHFKF LSKQPHMLLA PVAQKTAQKV YIQNYGRIER CTLANCEDIS NEEKKAWPAL HASGVDFSDI
1401: WEFQDKLDVR EINHVFKSYG ISVSFRHLNL IADYMTFSGG YRPMSRFGGI AESTSPFCRM TFETATKFIV QAATYGEVDR LETPSARICL GLPALSGTGG
1501: FDLLQRIEV
0001: MAHAQTTEVC LSFHRSLLFP MGASQVVESV RFSFMTEQDV RKHSFLKVTS PILHDNVGNP FPGGLYDLKL GPKDDKQACN SCGQLKLACP GHCGHIELVF
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.