Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33046 | Soybean | nucleus | 88.51 | 69.05 |
| CDY65464 | Canola | nucleus | 34.63 | 47.6 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 61.26 | 46.66 |
| CDY06084 | Canola | nucleus | 54.81 | 46.42 |
| CDX72007 | Canola | nucleus | 54.66 | 45.86 |
| Bra007345.1-P | Field mustard | nucleus | 56.75 | 44.57 |
| CDX67702 | Canola | nucleus | 51.48 | 43.94 |
| Bra003294.1-P | Field mustard | nucleus | 53.73 | 43.8 |
| AT3G57660.1 | Thale cress | nucleus | 56.52 | 43.59 |
| Solyc10g080350.1.1 | Tomato | nucleus | 55.2 | 42.4 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 48.76 | 41.92 |
| Os06t0612200-01 | Rice | nucleus | 7.53 | 40.93 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 49.69 | 37.83 |
| Zm00001d029055_P010 | Maize | nucleus | 48.14 | 36.69 |
| KXG22455 | Sorghum | nucleus | 47.67 | 35.45 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 45.03 | 35.05 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 44.8 | 34.82 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 44.72 | 34.57 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 44.72 | 32.4 |
| CDY65462 | Canola | nucleus | 8.31 | 29.89 |
| KRG88695 | Soybean | nucleus | 22.44 | 20.78 |
| KRH40807 | Soybean | nucleus | 23.06 | 16.76 |
| KRH76591 | Soybean | nucleus | 23.76 | 16.75 |
| KRH28855 | Soybean | nucleus | 23.6 | 16.64 |
| KRH27976 | Soybean | nucleus | 16.54 | 14.65 |
| KRH77477 | Soybean | nucleus | 16.38 | 14.48 |
| KRH20723 | Soybean | nucleus | 16.23 | 10.35 |
| KRH13386 | Soybean | nucleus | 16.38 | 10.13 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.1.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | UniProt:A0A0R0L5S8 | EMBL:ACUP02001124 |
| InterPro:DNA-dir_RNA_pol1_lsu | EnsemblPlantsGene:GLYMA_02G181200 | GO:GO:0001054 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005736 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006360 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0016779 | InterPro:IPR038120 | EnsemblPlants:KRH71957 | ProteinID:KRH71957 | ProteinID:KRH71957.1 | PFAM:PF00623 |
| PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF11 |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI0006ED5C5D | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr2:-:30932402..30949564
Molecular Weight (calculated)
145408.0 Da
IEP (calculated)
7.216
GRAVY (calculated)
-0.352
Length
1288 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVLSTEGATN SVEVVAFSFL TDDEIRRSSR VKITNPILIF NLSCTYFTCL ELSCKSCGQT TKHCPDHFGH IELVSPVYNP LTFNIPSNIL QRTCFSCHHF
0101: QSLRKEVDIR AFQLELIMKG DIIMAKNLES IITEKSNSVL RKFLTKKHKC QECGAENPRI SKPTFGWFYM VLQCNISLGD AHLNKSDPSK VLSWWMDLQQ
0201: SVNMLFDNKT ASGKRDVATG ICRLLEKKEG IFRQKMMGKM VYFACRSVIS PDPYLAVNEI GIPPYFALRL SVTPWNVVKL RNAILNGAES HPSASHYADK
0301: VSIVKLPPKG KEISDHEFEG KVVYRHLKDG DVVLANRQPT LHKPSIMAHI VRVLKGEKTV RMHYANCRVT TVNNFFVLFF PLRDLCTYNA DFDGDEINVH
0401: FPQDEISRAE AYNIVNANNQ YVKPTSGDPI RALIQDHIVS AALLTKKDTF LSYEEFNQLL YSSGVSMAGL GSFYGKHGQK VFMSNSESEM FLALLYYITR
0501: GSPSFTVEKN AKIPSNFFKT RIRKGKRYTQ DTSKKKEKPD EDKLLIYKND LVLQELYGSN VAGNLLSALS RLFTTFLQMH GFTCGVDDLM LTEGKDVERM
0601: NQLNSCEIIG NSVHREFIRV KNSDNIDSVT LQLNIEKKIR SNGEATLTSD RKMTNKLNST TSSGILKELL SEGILQPSGK NCISLMTTSG AKGSMVNFQQ
0701: ISSHLGQQEL EGKRVPRMVS GKTLPCFPPW DCSPRAGGFI IDRFLTALHP QEYYFFDTAV KTSRSGYLQR CLMKNLECLK VCYDHTVRDA DGSIIQFHYG
0801: EDGVDNKELV YSNYCRQLDR SSPYINKLPD ALEGKAEKFS KQRNLGSMEH ADFVRLIEHK YVSCLTQPGE PVGVLASQSV GEPATQMTER GEESSYSKSN
0901: SKMSFLLIVL TKILMAAARD IKTPFMTCPL RHEKSINLKK ITVADIIKSM KVSVVPVTVL GGQICSIYKL VMKLYKSKQY PEYTDITLED WEETLRVNFV
1001: RDSEDAHDNG SESEKKGQSN DEDDDGVVVE DTEGNEDLGS DAQKRKLQGT DEVDYEDGPE EETHDEKKKS EPTKRYDWAI FVEAKGMHFE IHFRFTGEPH
1101: ILLTQIVQRT AKKFCLQNFG KVGECKAITC KESGVIYYGK DDRKGDEISA FEKEEIPALQ TSGVHFKTFW ELEDDLDVRY IYSNNVLAML NAYGVEAARE
1201: TIIREVQNLN ADFMTHSGGY CLMNRTGSIA DSTSLFIKMC FETAAKFIVE AAYHGQVDNL ETPSARICIG LPVKMGTGCH DLIQKLEI
0101: QSLRKEVDIR AFQLELIMKG DIIMAKNLES IITEKSNSVL RKFLTKKHKC QECGAENPRI SKPTFGWFYM VLQCNISLGD AHLNKSDPSK VLSWWMDLQQ
0201: SVNMLFDNKT ASGKRDVATG ICRLLEKKEG IFRQKMMGKM VYFACRSVIS PDPYLAVNEI GIPPYFALRL SVTPWNVVKL RNAILNGAES HPSASHYADK
0301: VSIVKLPPKG KEISDHEFEG KVVYRHLKDG DVVLANRQPT LHKPSIMAHI VRVLKGEKTV RMHYANCRVT TVNNFFVLFF PLRDLCTYNA DFDGDEINVH
0401: FPQDEISRAE AYNIVNANNQ YVKPTSGDPI RALIQDHIVS AALLTKKDTF LSYEEFNQLL YSSGVSMAGL GSFYGKHGQK VFMSNSESEM FLALLYYITR
0501: GSPSFTVEKN AKIPSNFFKT RIRKGKRYTQ DTSKKKEKPD EDKLLIYKND LVLQELYGSN VAGNLLSALS RLFTTFLQMH GFTCGVDDLM LTEGKDVERM
0601: NQLNSCEIIG NSVHREFIRV KNSDNIDSVT LQLNIEKKIR SNGEATLTSD RKMTNKLNST TSSGILKELL SEGILQPSGK NCISLMTTSG AKGSMVNFQQ
0701: ISSHLGQQEL EGKRVPRMVS GKTLPCFPPW DCSPRAGGFI IDRFLTALHP QEYYFFDTAV KTSRSGYLQR CLMKNLECLK VCYDHTVRDA DGSIIQFHYG
0801: EDGVDNKELV YSNYCRQLDR SSPYINKLPD ALEGKAEKFS KQRNLGSMEH ADFVRLIEHK YVSCLTQPGE PVGVLASQSV GEPATQMTER GEESSYSKSN
0901: SKMSFLLIVL TKILMAAARD IKTPFMTCPL RHEKSINLKK ITVADIIKSM KVSVVPVTVL GGQICSIYKL VMKLYKSKQY PEYTDITLED WEETLRVNFV
1001: RDSEDAHDNG SESEKKGQSN DEDDDGVVVE DTEGNEDLGS DAQKRKLQGT DEVDYEDGPE EETHDEKKKS EPTKRYDWAI FVEAKGMHFE IHFRFTGEPH
1101: ILLTQIVQRT AKKFCLQNFG KVGECKAITC KESGVIYYGK DDRKGDEISA FEKEEIPALQ TSGVHFKTFW ELEDDLDVRY IYSNNVLAML NAYGVEAARE
1201: TIIREVQNLN ADFMTHSGGY CLMNRTGSIA DSTSLFIKMC FETAAKFIVE AAYHGQVDNL ETPSARICIG LPVKMGTGCH DLIQKLEI
0001: MAHAQTTEGA SQVVESVRFS FMTEQDVRKH SFLKVTSPIL HDNVGNPFPG GLYDLKLGPK DDKQACNSCG QLKLACPGHC GHIELVFPIY HPLLFNLLFN
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.