CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67702	Canola	nucleus	87.15	20.68
CDY06084	Canola	nucleus	71.79	16.9
CDX72007	Canola	nucleus	71.79	16.74
AT3G57660.1	Thale cress	nucleus	70.67	15.15
VIT_08s0007g08090.t01	Wine grape	cytosol, nucleus, plastid	57.54	12.18
KRH33046	Soybean	nucleus	53.07	11.51
GSMUA_Achr3P28430_001	Banana	nucleus	47.77	11.42
Solyc10g080350.1.1	Tomato	nucleus	50.0	10.67
GSMUA_Achr7P08010_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	47.77	10.11
Zm00001d029055_P010	Maize	nucleus	45.53	9.64
KXG22455	Sorghum	nucleus	45.81	9.47
TraesCS4A01G357100.1	Wheat	nucleus	42.18	9.12
TraesCS5D01G515800.1	Wheat	nucleus	41.62	8.99
TraesCS5B01G515600.1	Wheat	nucleus	41.62	8.94
HORVU5Hr1G117770.4	Barley	nucleus, plastid	42.18	8.49
KRH71957	Soybean	nucleus	29.89	8.31
CDY50743	Canola	nucleus	15.36	6.74
CDY71816	Canola	cytosol	5.03	6.32
CDY09230	Canola	nucleus	22.63	5.91
CDY32191	Canola	nucleus	15.64	3.88
CDX93859	Canola	nucleus	15.64	3.87
CDY49206	Canola	nucleus	15.64	3.84
CDX69166	Canola	cytosol	24.02	3.26
CDY60335	Canola	nucleus	16.76	3.21
CDX75527	Canola	nucleus	23.46	3.09
CDY08876	Canola	nucleus	13.13	2.9
CDY07630	Canola	nucleus	16.76	2.62
CDY65464	Canola	nucleus	3.35	1.28
Os06t0612200-01	Rice	nucleus	0.0	0.0
CDY68589	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.40.40.70	MapMan:35.1	GO:A0A078JJD8	UniProt:A0A078JJD8
EnsemblPlants:CDY65462	ProteinID:CDY65462	ProteinID:CDY65462.1	InterPro:DNA-dir_RNA_pol1_lsu	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	EnsemblPlantsGene:GSBRNA2T00046640001
PFAM:PF00623	PFAM:PF04997	PANTHER:PTHR19376	PANTHER:PTHR19376:SF11	InterPro:RNA_pol_N	InterPro:RNA_pol_Rpb1_1
InterPro:RNA_pol_asu	SMART:SM00663	SUPFAM:SSF64484	SignalP:SignalP-noTM	UniParc:UPI0004EF3A48	SEG:seg

Description

BnaAnng20520DDNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A078JJD8]

Coordinates

chrLK034797:+:14539..17310

Molecular Weight (calculated)

40673.5 Da

IEP (calculated)

7.225

GRAVY (calculated)

-0.559

Length

358 amino acids

Sequence
(BLAST)

001: MEETHWVWLF STLCSSLISE SCDIPIYNII SNQEEKKATD NGDNVIRGIK AKNSENIVES DDDSAIDEQS EVEDEGAKKK RGKSSKAAKE FKEHKKKTKI
101: NVLPSEVREI LKDLWRNHPE FCSFIGDLWQ SGSEKNDYAM FFLESILVPP TKFRPPTKEG DNVMEHPQTV GLNKVLESNI ALGNARTNQL EKSKIVSRWM
201: DLQESVNVLF DSKTSSVKSQ REQGTGICQV LEKKEGLFRQ KMMGKRVNHA CRSVISPDPY IAVNDIGIPP CFALKLTYPE RVTPWNVEKL RKAIINGPDI
301: HPGATQYSDK LFSSRGVTTQ LGKTCDIEFE CKIVYRHMQD GDVVLVNRQV WAHTVLFH

Best Arabidopsis Sequence Match ( AT3G57660.1 )
(BLAST)

0001: MAHAQTTEVC LSFHRSLLFP MGASQVVESV RFSFMTEQDV RKHSFLKVTS PILHDNVGNP FPGGLYDLKL GPKDDKQACN SCGQLKLACP GHCGHIELVF
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL

Arabidopsis Description

NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.