Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000162.1-P | Field mustard | nucleus | 98.56 | 89.46 |
| AT2G40030.1 | Thale cress | nucleus | 79.03 | 74.75 |
| VIT_13s0067g03120.t01 | Wine grape | nucleus | 33.98 | 63.76 |
| Solyc01g096390.2.1 | Tomato | nucleus | 47.24 | 52.62 |
| CDY07630 | Canola | nucleus | 61.58 | 50.22 |
| KRH20723 | Soybean | nucleus | 48.05 | 44.46 |
| KRH13386 | Soybean | nucleus | 48.53 | 43.56 |
| GSMUA_Achr3P05700_001 | Banana | nucleus | 32.8 | 42.78 |
| TraesCS6B01G094400.1 | Wheat | nucleus | 33.6 | 39.42 |
| Zm00001d053872_P021 | Maize | nucleus | 39.81 | 38.17 |
| TraesCS6D01G113900.1 | Wheat | nucleus | 39.06 | 37.49 |
| TraesCS6A01G123800.1 | Wheat | nucleus | 39.11 | 37.33 |
| TraesCS6B01G151900.1 | Wheat | nucleus | 38.9 | 37.32 |
| OQU84386 | Sorghum | nucleus | 40.07 | 37.17 |
| HORVU6Hr1G022890.1 | Barley | nucleus | 39.0 | 36.97 |
| CDX93859 | Canola | nucleus | 17.44 | 22.53 |
| CDY32191 | Canola | nucleus | 17.34 | 22.44 |
| CDY49206 | Canola | nucleus | 17.39 | 22.26 |
| CDY50743 | Canola | nucleus | 9.42 | 21.57 |
| CDY68589 | Canola | cytosol | 5.89 | 20.64 |
| CDY71816 | Canola | cytosol | 2.78 | 18.25 |
| CDY09230 | Canola | nucleus | 12.47 | 17.01 |
| CDY65462 | Canola | nucleus | 3.21 | 16.76 |
| CDY06084 | Canola | nucleus | 12.84 | 15.78 |
| CDX72007 | Canola | nucleus | 12.79 | 15.57 |
| CDX67702 | Canola | nucleus | 12.36 | 15.31 |
| CDY08876 | Canola | nucleus | 12.79 | 14.76 |
| CDY65464 | Canola | nucleus | 7.22 | 14.41 |
| CDX69166 | Canola | cytosol | 15.09 | 10.68 |
| CDX75527 | Canola | nucleus | 15.36 | 10.57 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.20.120.1280 | MapMan:15.1.5.1 | Gene3D:2.40.40.20 | Gene3D:3.10.450.40 |
| Gene3D:3.30.1490.180 | GO:A0A078J372 | UniProt:A0A078J372 | EnsemblPlants:CDY60335 | ProteinID:CDY60335 | ProteinID:CDY60335.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | EnsemblPlantsGene:GSBRNA2T00028502001 | PFAM:PF00623 | PFAM:PF04983 |
| PFAM:PF04997 | PFAM:PF04998 | PFAM:PF11523 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF36 | InterPro:RNA_pol_N |
| InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | SMART:SM00663 | SUPFAM:SSF64484 |
| UniParc:UPI0004EEA0AE | SEG:seg | : | : | : | : |
Description
BnaC03g72290DDNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A078J372]
Coordinates
chrLK033871:+:9719..18651
Molecular Weight (calculated)
205909.0 Da
IEP (calculated)
5.679
GRAVY (calculated)
-0.524
Length
1869 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEASSSDIL EAEIVGISFA LATHRQIRLA SISDAGINHA SQLSNAFLGL PLEFGKCEAC GATEPDKCEG HFGYIHLPVP IYHPAHVSEL KQMLSLLCLK
0101: CLKIKKIKST SSGLAERLLG VCCEEASNIT IKDKSSDGAS YLQLKLPSRT RLQEGFWNFL ERYGYRYGSD HTRPLLAREV KEILRRIPEE TRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEVSDGSNSM SVDPSRIELK DVLRKVVAIN NSRSGETNFE SHRAEANEMF RVVDTYLQVR GTAKPTRNID MRFGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAFRNVNEVG IPMEIAHRIT FEERVSVHNI GYLQELVDNK MCLSYTQGST TYSLRDGSKG HTVLKPGQIV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCGPLSADF DGDCVHLFYP QSLTAKAEVL ELFSVDKQLR SSHTGQLILQ LGLDSLLSLR
0501: VMMEQVFLDK ASAQQLAMYG SRSLPSPAVV KSSKSSPAWT FFQILQLAFP ERLSCRGDGF IVGGSDLLSF DFGVDALASI INGIVTGIMV EKGPKEALAF
0601: FDSLQPLLME HLDPQGFSLS LEDLSMSRED MGVIHNLIVR EISPMVSRLR LSYEDELQLE NSIQKVKEVA ANFMLKSYSM RNLIDIKSNS AINKLVQQIG
0701: FLGLQLSDKK KLYTKTLVED MAQFYKKKYV STSSSGDFGI VKGCFFHGLD PYEEMAHSVA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSIVQFKY ELSSDNENQG LFEAGDPVGV LAATAMSNPA YKAVLDFSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECRCGKKY CQENSAYTVR
0901: NKLKKVSLKD TAVEFLVEYR KQQAISEIFG MDICLHGHIH LNKTLLEGWN ISMQDILQRC EDAINSLVQK KKKKAEDFKK MNLSVSECCS FRGPGSSKDS
1001: DMPCLMFSSY NATDPDLERT LDVLCNTIYP VLLETVIKGD PRIASANIIW NSPETTTWIR SLHASRRGEW VLDVTVEKSD VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SIKQVQELLG LSCAFEQAVQ RLSASVRKVS KGVLKEHIIL VANNMTCSGD MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHKDSLSTVV GSCSWGKRVD VGTGSQFELL WNKKETGLEN DDETDVFSFL QMVRSTKTAD AYVSSPGFDV TEEEMAEWAE SPERDSALGE PKFDDSAEFQ
1301: NLLDEGKASE SKWDNGSLWE NGCSSGSEWG VSKNAGGEEN TQSGWGKAAN VENEDASSGW NSKKDAQEAT NTDSWGAWGS KTKDDAENAT PNWGTKPAQN
1401: DSVVIENGEP SSDVWGPKAV SDKPWGKKNS ETEPAPAAWG KTNSESGATW GSRDKSKFET ESGGAAWGSQ AKNNSETEPG SGAAAWGTWD KKKSETESGG
1501: GGAAWGSQAK NNSETESGSG AAAWGKKKPE TESGGGAAWG SQAKKNSESQ LGAANWGSKD TNNSENGSDS AAWGKKKNSE AEPTSVAWGS WGQPSPPASD
1601: KDAQEDDGNP WVSLKATSSG DKEGNETSQW GVPNKRYPSA GSQSQGGGGG ADWKRNRPPR TPGSESILGP MFTATRQRVD MFTSEEQELL SDVDPVMRRL
1701: RKIMHQSGYT DGEPISDEDK TYVLEQILNY HPDKDAKLGP GLDFITVDKH TTFTESRCFF VVSTDGTKQD FSYRKCINNY LVEKHPNLAE EFIAKYFRKR
1801: DNENRDKNSQ EATPPGEQEP QTQPIDNGSQ DSQPQPIGNE GGVTQPQSQI EDIQPIGNGG EDSQTEPQA
0101: CLKIKKIKST SSGLAERLLG VCCEEASNIT IKDKSSDGAS YLQLKLPSRT RLQEGFWNFL ERYGYRYGSD HTRPLLAREV KEILRRIPEE TRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEVSDGSNSM SVDPSRIELK DVLRKVVAIN NSRSGETNFE SHRAEANEMF RVVDTYLQVR GTAKPTRNID MRFGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAFRNVNEVG IPMEIAHRIT FEERVSVHNI GYLQELVDNK MCLSYTQGST TYSLRDGSKG HTVLKPGQIV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCGPLSADF DGDCVHLFYP QSLTAKAEVL ELFSVDKQLR SSHTGQLILQ LGLDSLLSLR
0501: VMMEQVFLDK ASAQQLAMYG SRSLPSPAVV KSSKSSPAWT FFQILQLAFP ERLSCRGDGF IVGGSDLLSF DFGVDALASI INGIVTGIMV EKGPKEALAF
0601: FDSLQPLLME HLDPQGFSLS LEDLSMSRED MGVIHNLIVR EISPMVSRLR LSYEDELQLE NSIQKVKEVA ANFMLKSYSM RNLIDIKSNS AINKLVQQIG
0701: FLGLQLSDKK KLYTKTLVED MAQFYKKKYV STSSSGDFGI VKGCFFHGLD PYEEMAHSVA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSIVQFKY ELSSDNENQG LFEAGDPVGV LAATAMSNPA YKAVLDFSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECRCGKKY CQENSAYTVR
0901: NKLKKVSLKD TAVEFLVEYR KQQAISEIFG MDICLHGHIH LNKTLLEGWN ISMQDILQRC EDAINSLVQK KKKKAEDFKK MNLSVSECCS FRGPGSSKDS
1001: DMPCLMFSSY NATDPDLERT LDVLCNTIYP VLLETVIKGD PRIASANIIW NSPETTTWIR SLHASRRGEW VLDVTVEKSD VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SIKQVQELLG LSCAFEQAVQ RLSASVRKVS KGVLKEHIIL VANNMTCSGD MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHKDSLSTVV GSCSWGKRVD VGTGSQFELL WNKKETGLEN DDETDVFSFL QMVRSTKTAD AYVSSPGFDV TEEEMAEWAE SPERDSALGE PKFDDSAEFQ
1301: NLLDEGKASE SKWDNGSLWE NGCSSGSEWG VSKNAGGEEN TQSGWGKAAN VENEDASSGW NSKKDAQEAT NTDSWGAWGS KTKDDAENAT PNWGTKPAQN
1401: DSVVIENGEP SSDVWGPKAV SDKPWGKKNS ETEPAPAAWG KTNSESGATW GSRDKSKFET ESGGAAWGSQ AKNNSETEPG SGAAAWGTWD KKKSETESGG
1501: GGAAWGSQAK NNSETESGSG AAAWGKKKPE TESGGGAAWG SQAKKNSESQ LGAANWGSKD TNNSENGSDS AAWGKKKNSE AEPTSVAWGS WGQPSPPASD
1601: KDAQEDDGNP WVSLKATSSG DKEGNETSQW GVPNKRYPSA GSQSQGGGGG ADWKRNRPPR TPGSESILGP MFTATRQRVD MFTSEEQELL SDVDPVMRRL
1701: RKIMHQSGYT DGEPISDEDK TYVLEQILNY HPDKDAKLGP GLDFITVDKH TTFTESRCFF VVSTDGTKQD FSYRKCINNY LVEKHPNLAE EFIAKYFRKR
1801: DNENRDKNSQ EATPPGEQEP QTQPIDNGSQ DSQPQPIGNE GGVTQPQSQI EDIQPIGNGG EDSQTEPQA
0001: MEEESTSEIL DGEIVGITFA LASHHEICIQ SISESAINHP SQLTNAFLGL PLEFGKCESC GATEPDKCEG HFGYIQLPVP IYHPAHVNEL KQMLSLLCLK
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
Arabidopsis Description
NRPE1DNA-directed RNA polymerase V subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5D869]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.