Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018814.1-P | Field mustard | nucleus | 99.59 | 99.19 |
| CDY28102 | Canola | nucleus | 97.55 | 97.55 |
| AT1G49590.1 | Thale cress | nucleus | 86.12 | 87.19 |
| VIT_03s0063g00890.t01 | Wine grape | nucleus | 57.96 | 55.25 |
| KRH71626 | Soybean | nucleus | 54.29 | 54.06 |
| KRH76336 | Soybean | nucleus | 53.47 | 53.04 |
| KRH33288 | Soybean | nucleus | 53.47 | 53.04 |
| PGSC0003DMT400066376 | Potato | nucleus | 55.92 | 52.29 |
| Solyc01g108430.2.1 | Tomato | nucleus | 55.92 | 52.29 |
| Zm00001d044917_P001 | Maize | nucleus | 52.24 | 52.03 |
| Os06t0215200-01 | Rice | nucleus | 51.43 | 51.85 |
| EER89414 | Sorghum | nucleus | 51.43 | 51.64 |
| TraesCS7A01G173200.1 | Wheat | nucleus | 50.61 | 50.82 |
| TraesCS7D01G174600.1 | Wheat | nucleus | 50.61 | 50.82 |
| GSMUA_Achr10P... | Banana | nucleus | 39.59 | 50.52 |
| TraesCS7B01G078500.1 | Wheat | nucleus | 50.2 | 50.41 |
| HORVU7Hr1G035910.4 | Barley | nucleus | 50.61 | 46.97 |
Protein Annotations
| EnsemblPlants:CDY50960 | EnsemblPlantsGene:GSBRNA2T00097837001 | GO:A0A078IIR6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | InterPro:IPR000690 |
| InterPro:Matrin/U1-C_Znf_C2H2 | InterPro:U1-CZ_Znf_C2H2 | PANTHER:PTHR13173 | PFAM:PF06220 | PFscan:PS50171 | ProteinID:CDY50960 |
| ProteinID:CDY50960.1 | SEG:seg | UniParc:UPI0004EDC00B | UniProt:A0A078IIR6 | MapMan:35.1 | : |
Description
BnaA06g37560DBnaA06g37560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIR6]
Coordinates
chrLK032953:-:18574..20121
Molecular Weight (calculated)
27562.5 Da
IEP (calculated)
10.200
GRAVY (calculated)
-0.925
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEYWVSQGK KWCEFCKIWT QNNATSIRNH ELGKHHRECV EKKLTDMREK SAAKDKELKK NEKLLQQIEA KATRSYQKDI ATAHEVAKAN GAPEDGTRDW
101: VLDAASGYYY NQINGLHYDS KSGFYYSDSI GRWVTQDEAY AAVKTSSDKD TKVPLVKKAV LSSEAGPSVA KPPGRVVSAT LNPKRNVKGA ASSVEIGNNK
201: RKRIDDKPKK AVSAEEKAAL RAREAARKRV ENREKSLLGL YNRPF
101: VLDAASGYYY NQINGLHYDS KSGFYYSDSI GRWVTQDEAY AAVKTSSDKD TKVPLVKKAV LSSEAGPSVA KPPGRVVSAT LNPKRNVKGA ASSVEIGNNK
201: RKRIDDKPKK AVSAEEKAAL RAREAARKRV ENREKSLLGL YNRPF
001: MTEYWVSQGN KWCEFCKIWI QNNPTSIRNH DLGKRHRECV DKKLTDMRER SAAKDKELKK NEKLLQQIEA KATRSYQKDI ATAQQVAKAN GAPEDGTSDW
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF
Arabidopsis Description
ZOP1Zinc finger protein ZOP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.