Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89414 | Sorghum | nucleus | 82.3 | 81.97 |
| TraesCS7D01G174600.1 | Wheat | nucleus | 79.84 | 79.51 |
| TraesCS7B01G078500.1 | Wheat | nucleus | 79.42 | 79.1 |
| Zm00001d044917_P001 | Maize | nucleus | 79.84 | 78.86 |
| TraesCS7A01G173200.1 | Wheat | nucleus | 79.01 | 78.69 |
| HORVU7Hr1G035910.4 | Barley | nucleus | 80.66 | 74.24 |
| GSMUA_Achr10P... | Banana | nucleus | 55.56 | 70.31 |
| KRH33288 | Soybean | nucleus | 59.26 | 58.3 |
| KRH76336 | Soybean | nucleus | 59.26 | 58.3 |
| KRH71626 | Soybean | nucleus | 58.85 | 58.13 |
| VIT_03s0063g00890.t01 | Wine grape | nucleus | 60.08 | 56.81 |
| AT1G49590.1 | Thale cress | nucleus | 55.56 | 55.79 |
| CDY50960 | Canola | nucleus | 51.85 | 51.43 |
| CDY28102 | Canola | nucleus | 51.85 | 51.43 |
| Bra018814.1-P | Field mustard | nucleus | 51.85 | 51.22 |
| PGSC0003DMT400066376 | Potato | nucleus | 54.73 | 50.76 |
| Solyc01g108430.2.1 | Tomato | nucleus | 54.32 | 50.38 |
Protein Annotations
| Gene3D:3.30.160.60 | MapMan:35.1 | EntrezGene:4340481 | EMBL:AK065717 | ProteinID:BAD35314.1 | ProteinID:BAF19050.1 |
| ProteinID:BAS96772.1 | ncoils:Coil | ProteinID:EAZ36266.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003690 | GO:GO:0003723 | GO:GO:0003725 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0008380 | GO:GO:0009791 | GO:GO:0009845 |
| GO:GO:0009987 | GO:GO:0015030 | GO:GO:0046872 | GO:GO:0080188 | InterPro:IPR000690 | InterPro:Matrin/U1-C_Znf_C2H2 |
| InterPro:Matrin/U1-like-C_Znf_C2H2 | EnsemblPlantsGene:Os06g0215200 | EnsemblPlants:Os06t0215200-01 | PFAM:PF06220 | PFscan:PS50171 | PANTHER:PTHR13173 |
| PANTHER:PTHR13173:SF10 | UniProt:Q69Y13 | SMART:SM00451 | SUPFAM:SSF57667 | InterPro:U1-CZ_Znf_C2H2 | UniParc:UPI0000403751 |
| RefSeq:XP_015644323.1 | InterPro:Znf_C2H2_sf | SEG:seg | : | : | : |
Description
Zinc finger, U1-C type domain containing protein. (Os06t0215200-01);Similar to nucleic acid binding protein. (Os06t0215200-02);Similar to nucleic acid binding protein. (Os06t0215200-03)
Coordinates
chr6:-:5857427..5861125
Molecular Weight (calculated)
27078.8 Da
IEP (calculated)
10.051
GRAVY (calculated)
-0.950
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEYWVSQGN KWCDFCKIYI ANNPLSIRTH EIGKRHKDNV TKRLATMQKE GAAKEKEQQQ AARALKQIEA KAKKSYQKDL ENSQRNVDGD TSAAPGDGWE
101: FDSTSGYYYD KSTGLYFDSN SGFYYSDGLG KWVTQEEAYA WAKTSQANAG QSSSSQTKPT ASVATVPTIK GGQAPGLVVK KPLNPMRTVK GAPSAIAVNK
201: RKREDGKPKV ISKEEEAALK AREAARKRME DREKPLMGLY RSY
101: FDSTSGYYYD KSTGLYFDSN SGFYYSDGLG KWVTQEEAYA WAKTSQANAG QSSSSQTKPT ASVATVPTIK GGQAPGLVVK KPLNPMRTVK GAPSAIAVNK
201: RKREDGKPKV ISKEEEAALK AREAARKRME DREKPLMGLY RSY
001: MTEYWVSQGN KWCEFCKIWI QNNPTSIRNH DLGKRHRECV DKKLTDMRER SAAKDKELKK NEKLLQQIEA KATRSYQKDI ATAQQVAKAN GAPEDGTSDW
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF
Arabidopsis Description
ZOP1Zinc finger protein ZOP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.