Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g108430.2.1 | Tomato | nucleus | 97.71 | 97.71 |
| VIT_03s0063g00890.t01 | Wine grape | nucleus | 62.98 | 64.2 |
| GSMUA_Achr10P... | Banana | nucleus | 43.13 | 58.85 |
| AT1G49590.1 | Thale cress | nucleus | 54.2 | 58.68 |
| KRH76336 | Soybean | nucleus | 54.2 | 57.49 |
| KRH33288 | Soybean | nucleus | 54.2 | 57.49 |
| KRH71626 | Soybean | nucleus | 53.82 | 57.32 |
| Bra018814.1-P | Field mustard | nucleus | 52.67 | 56.1 |
| CDY50960 | Canola | nucleus | 52.29 | 55.92 |
| CDY28102 | Canola | nucleus | 51.91 | 55.51 |
| EER89414 | Sorghum | nucleus | 51.15 | 54.92 |
| TraesCS7B01G078500.1 | Wheat | nucleus | 51.15 | 54.92 |
| Os06t0215200-01 | Rice | nucleus | 50.76 | 54.73 |
| TraesCS7A01G173200.1 | Wheat | nucleus | 50.76 | 54.51 |
| TraesCS7D01G174600.1 | Wheat | nucleus | 50.38 | 54.1 |
| Zm00001d044917_P001 | Maize | nucleus | 50.38 | 53.66 |
| HORVU7Hr1G035910.4 | Barley | nucleus | 50.38 | 50.0 |
Protein Annotations
| EntrezGene:102604502 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003690 | GO:GO:0003723 | GO:GO:0003725 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0008380 | GO:GO:0009791 | GO:GO:0009845 |
| GO:GO:0009987 | GO:GO:0015030 | GO:GO:0046872 | GO:GO:0080188 | InterPro:IPR000690 | UniProt:M1CFH0 |
| InterPro:Matrin/U1-C_Znf_C2H2 | InterPro:Matrin/U1-like-C_Znf_C2H2 | PFAM:PF06220 | EnsemblPlantsGene:PGSC0003DMG400025811 | PGSC:PGSC0003DMG400025811 | EnsemblPlants:PGSC0003DMT400066376 |
| PFscan:PS50171 | PANTHER:PTHR13173 | PANTHER:PTHR13173:SF10 | SMART:SM00451 | SUPFAM:SSF57667 | InterPro:U1-CZ_Znf_C2H2 |
| UniParc:UPI0002949282 | RefSeq:XP_006346452.1 | InterPro:Znf_C2H2_sf | SEG:seg | : | : |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025811]
Coordinates
chr1:+:84828586..84833713
Molecular Weight (calculated)
29249.1 Da
IEP (calculated)
9.973
GRAVY (calculated)
-1.022
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEFWVSQGN KWCDFCKIFI SNNPMSIRNH ELGTRHKESV GNRLNTMRQE KATKDKELKE AARALEQIEA KAQRSYDKDM ARVKEARSTN IQALATRDNG
101: QATTKGSAVS EEWEYDSSSG YYYNQSNGCS YDPNSGFYYT DVLGRWVTQE EALAATQVSS TSISKKPLAK APVSTMGAGS SENKSTESHQ SGPPPGRVVS
201: TPPNPMRSAK GKPSSLMVNK RKRENEKPKA VTEEEAAARK AREAARKRVE EREKSLLGLY KH
101: QATTKGSAVS EEWEYDSSSG YYYNQSNGCS YDPNSGFYYT DVLGRWVTQE EALAATQVSS TSISKKPLAK APVSTMGAGS SENKSTESHQ SGPPPGRVVS
201: TPPNPMRSAK GKPSSLMVNK RKRENEKPKA VTEEEAAARK AREAARKRVE EREKSLLGLY KH
001: MTEYWVSQGN KWCEFCKIWI QNNPTSIRNH DLGKRHRECV DKKLTDMRER SAAKDKELKK NEKLLQQIEA KATRSYQKDI ATAQQVAKAN GAPEDGTSDW
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF
Arabidopsis Description
ZOP1Zinc finger protein ZOP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.