Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g008960.2.1 | |
| Solyc01g108430.2.1 | |
| Solyc06g073530.1.1 | |
| Solyc06g073540.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0067g03120.t01 | Wine grape | nucleus | 41.3 | 69.58 |
| CDY60335 | Canola | nucleus | 52.62 | 47.24 |
| GSMUA_Achr3P05700_001 | Banana | nucleus | 40.29 | 47.17 |
| KRH20723 | Soybean | nucleus | 55.01 | 45.69 |
| AT2G40030.1 | Thale cress | nucleus | 53.22 | 45.19 |
| KRH13386 | Soybean | nucleus | 55.66 | 44.86 |
| Bra000162.1-P | Field mustard | nucleus | 53.28 | 43.42 |
| TraesCS6B01G094400.1 | Wheat | nucleus | 40.05 | 42.18 |
| TraesCS6D01G113900.1 | Wheat | nucleus | 46.13 | 39.75 |
| TraesCS6A01G123800.1 | Wheat | nucleus | 46.25 | 39.63 |
| TraesCS6B01G151900.1 | Wheat | nucleus | 46.01 | 39.63 |
| Zm00001d053872_P021 | Maize | nucleus | 45.95 | 39.56 |
| HORVU6Hr1G022890.1 | Barley | nucleus | 46.07 | 39.2 |
| OQU84386 | Sorghum | nucleus | 45.65 | 38.01 |
| CDY07630 | Canola | nucleus | 34.98 | 25.61 |
| Solyc08g080210.2.1 | Tomato | nucleus | 16.98 | 23.63 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 3.28 | 20.83 |
| Solyc11g072730.1.1 | Tomato | nucleus | 13.89 | 16.76 |
| Solyc02g083350.2.1 | Tomato | nucleus | 17.76 | 16.14 |
| Solyc10g080350.1.1 | Tomato | nucleus | 14.36 | 14.37 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.20.120.1280 | MapMan:15.1.5.1 | Gene3D:2.40.40.20 | Gene3D:3.10.450.40 |
| Gene3D:3.30.1490.180 | GO:GO:0000419 | GO:GO:0001056 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005666 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006306 | GO:GO:0006351 | GO:GO:0006383 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0016604 | GO:GO:0016740 |
| GO:GO:0016779 | GO:GO:0030422 | GO:GO:0035194 | GO:GO:0040029 | GO:GO:0050832 | UniProt:K4B027 |
| PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF11523 | PANTHER:PTHR19376 |
| PANTHER:PTHR19376:SF36 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| SMART:SM00663 | SUPFAM:SSF64484 | EnsemblPlantsGene:Solyc01g096390.2 | EnsemblPlants:Solyc01g096390.2.1 | UniParc:UPI00027678A7 | SEG:seg |
Description
DNA-directed RNA polymerase V subunit 1 [Source:Projected from Arabidopsis thaliana (AT2G40030) UniProtKB/Swiss-Prot;Acc:Q5D869]
Coordinates
chr1:+:87475457..87499034
Molecular Weight (calculated)
186017.0 Da
IEP (calculated)
6.835
GRAVY (calculated)
-0.347
Length
1678 amino acids
Sequence
(BLAST)
(BLAST)
0001: MCLDRVFRVN INLASITRDL NAIQEVLPTF SVRRKQETQC GTDLMEEKSL SSKVSDGIVK RIKFGLATPQ EICKSSISDC PITHPSLLLN PFLGLPLEAG
0101: RCESCGTAEP GQCEGHFGYI ELPIPIYHPD HVSELKKMLS LLCLKCLKMK NRKFQVKNAG VLERMLSSCC EDVSQVSVYE GKTSDGASYL ELKVPKNAAK
0201: LQEWNFLEKY GYRYGDGYSR PLLPSEVLAI LRRIREDTRK KLSAKGYFPQ EGYILQYLPV PPNCLSVPDI SDGNNIMSSD HSITMLRKVL RQIDIIKSSR
0301: SGTPNFEAHE VEANDLQAAV VQYLQFRGTG KASRDVDKRF GIHKEAADTT TKAWLEKMKT LFIRKGSGFS SRSVITGDPY KGVGEIGLPC EIAQKITFEE
0401: RVSQHNMAYL QKLVDEKLCL TYKDGSSTYS LREGSKGHTF LRPGQIVHRR IMDGDTVFIN RPPTTHKHSL QALSVYVHDD HTVKINPLMC GPLSADFDGD
0501: CIHLFYPQSL SAKAEVLELF AVGKQLLSSH TGNFNLQLAT DSLLSLKLMF SHYFFDKAAA QQLAMFLPMA LPDSAVVDVR KSGAMWTTLQ ILGAALPDGF
0601: DSCGETHTIG KSQFLGIDYH RDLISSILND VITSIYFMKG PNDVLKFFNS LQPLLMENLC TEGFSISLRD FYMTKAVRDG IQERIQCMSK LLHHLRSSYN
0701: ESVEVQLEHH LRNEKLPVID FVLKSSGMGV LIDSKSESAF NKVVQQIGFL GLQISDRGKF YTKTLVHDMA QLFQKKYPSV GTNPSEEFGL VRSCLFYGLD
0801: PYQGMIHSIS SREVIVRSTR GLTEPGTLFK NLMAILRDVV ICYDGTVRNV SSNSIIQFEY GSSGGSNLPS EFCAGDPVGV LAATAMSNPA YKAVLDSSPS
0901: SNSSWEMMKE ILLCGVSFKN DVSDRRVILY LNDCGCRRGY CREKAAYVVK NHLSKVCLKD AADEFLIEYA GRQAGYENSE TGTGLIGHIR LNQGQLENLG
1001: ISVLEVHERC QENISSFQKK KKIGNLFKRI VLSVSEFCSF CHNSGSKCLN APCLRFSWPD ASDDHLERVS HILADMICPI LLDTVIKGDP RVSSANIAWI
1101: SPDTMSWIRS PSKSQRGELA LDIVLEKEAV KQRGDAWRIL MDSCLPVIHL IDTTRSIPYA IKQVQELIGI SCAFEQAVKR LSTSVTMVTK GVLKDHLVLL
1201: ANSMTCAGNL VGFNAGGIKA LSRSLNVQIP FTEATLFTPR KCFERAAEKC HVDSLSSIVA SCSWGKHVAV GTGSRFEVLL NTRNVEWNIP DTRDVYSFLH
1301: LVRNTSAQEV EGTSCLGAEI DELEEDEDMG LYLSPNRDSG SEMPTFEDRA EFDYNENLDE GKPSGSAWEK ASSGSVKSGG SWDMAGKTQN GAEEGVNQSD
1401: SWSAWGKKVD EPENNRQQSG SGEQSGSWSS WGKKVEKDGG SWDEPKQLNS ESSWGKAPNG GGLGSATAEG NKRLDQSVND WSSSVSRDGQ LNEPTHDDST
1501: KNGGWNSSNV GGWNSQKVGW KNNRPARSAD DSNRGGHFTA TRQKIDLFTA EEQEIISDVD PIMLNNDGDP LSADDQSYII DTVLNYHPDK AVKMGAGLDY
1601: ITVSKHTNFQ DTRCFYVVST DGAKQDFSTR KCLENFVRSK YPDKAETFNE KYFKKPPPPR VPKIASPPKI ASPAPSVD
0101: RCESCGTAEP GQCEGHFGYI ELPIPIYHPD HVSELKKMLS LLCLKCLKMK NRKFQVKNAG VLERMLSSCC EDVSQVSVYE GKTSDGASYL ELKVPKNAAK
0201: LQEWNFLEKY GYRYGDGYSR PLLPSEVLAI LRRIREDTRK KLSAKGYFPQ EGYILQYLPV PPNCLSVPDI SDGNNIMSSD HSITMLRKVL RQIDIIKSSR
0301: SGTPNFEAHE VEANDLQAAV VQYLQFRGTG KASRDVDKRF GIHKEAADTT TKAWLEKMKT LFIRKGSGFS SRSVITGDPY KGVGEIGLPC EIAQKITFEE
0401: RVSQHNMAYL QKLVDEKLCL TYKDGSSTYS LREGSKGHTF LRPGQIVHRR IMDGDTVFIN RPPTTHKHSL QALSVYVHDD HTVKINPLMC GPLSADFDGD
0501: CIHLFYPQSL SAKAEVLELF AVGKQLLSSH TGNFNLQLAT DSLLSLKLMF SHYFFDKAAA QQLAMFLPMA LPDSAVVDVR KSGAMWTTLQ ILGAALPDGF
0601: DSCGETHTIG KSQFLGIDYH RDLISSILND VITSIYFMKG PNDVLKFFNS LQPLLMENLC TEGFSISLRD FYMTKAVRDG IQERIQCMSK LLHHLRSSYN
0701: ESVEVQLEHH LRNEKLPVID FVLKSSGMGV LIDSKSESAF NKVVQQIGFL GLQISDRGKF YTKTLVHDMA QLFQKKYPSV GTNPSEEFGL VRSCLFYGLD
0801: PYQGMIHSIS SREVIVRSTR GLTEPGTLFK NLMAILRDVV ICYDGTVRNV SSNSIIQFEY GSSGGSNLPS EFCAGDPVGV LAATAMSNPA YKAVLDSSPS
0901: SNSSWEMMKE ILLCGVSFKN DVSDRRVILY LNDCGCRRGY CREKAAYVVK NHLSKVCLKD AADEFLIEYA GRQAGYENSE TGTGLIGHIR LNQGQLENLG
1001: ISVLEVHERC QENISSFQKK KKIGNLFKRI VLSVSEFCSF CHNSGSKCLN APCLRFSWPD ASDDHLERVS HILADMICPI LLDTVIKGDP RVSSANIAWI
1101: SPDTMSWIRS PSKSQRGELA LDIVLEKEAV KQRGDAWRIL MDSCLPVIHL IDTTRSIPYA IKQVQELIGI SCAFEQAVKR LSTSVTMVTK GVLKDHLVLL
1201: ANSMTCAGNL VGFNAGGIKA LSRSLNVQIP FTEATLFTPR KCFERAAEKC HVDSLSSIVA SCSWGKHVAV GTGSRFEVLL NTRNVEWNIP DTRDVYSFLH
1301: LVRNTSAQEV EGTSCLGAEI DELEEDEDMG LYLSPNRDSG SEMPTFEDRA EFDYNENLDE GKPSGSAWEK ASSGSVKSGG SWDMAGKTQN GAEEGVNQSD
1401: SWSAWGKKVD EPENNRQQSG SGEQSGSWSS WGKKVEKDGG SWDEPKQLNS ESSWGKAPNG GGLGSATAEG NKRLDQSVND WSSSVSRDGQ LNEPTHDDST
1501: KNGGWNSSNV GGWNSQKVGW KNNRPARSAD DSNRGGHFTA TRQKIDLFTA EEQEIISDVD PIMLNNDGDP LSADDQSYII DTVLNYHPDK AVKMGAGLDY
1601: ITVSKHTNFQ DTRCFYVVST DGAKQDFSTR KCLENFVRSK YPDKAETFNE KYFKKPPPPR VPKIASPPKI ASPAPSVD
0001: MEEESTSEIL DGEIVGITFA LASHHEICIQ SISESAINHP SQLTNAFLGL PLEFGKCESC GATEPDKCEG HFGYIQLPVP IYHPAHVNEL KQMLSLLCLK
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
Arabidopsis Description
NRPE1DNA-directed RNA polymerase V subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5D869]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.