Factsheet for Zm00001d013542_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91198	Sorghum	nucleus	65.31	92.73
TraesCS4D01G024300.1	Wheat	cytosol	40.76	78.18
TraesCS4A01G288000.1	Wheat	cytosol	52.61	77.41
TraesCS4B01G024000.1	Wheat	nucleus	71.56	73.73
HORVU4Hr1G004030.1	Barley	mitochondrion	70.43	71.93
Os03t0682600-00	Rice	nucleus	49.86	70.42
Zm00001d015926_P001	Maize	nucleus	14.22	66.67
Zm00001d026146_P001	Maize	nucleus	9.19	66.44
Zm00001d018436_P001	Maize	cytosol	7.2	62.3
Zm00001d005045_P001	Maize	cytosol, nucleus, peroxisome, plastid	13.27	60.61
Zm00001d032611_P002	Maize	vacuole	20.0	56.72
Zm00001d033518_P001	Maize	nucleus	63.6	56.53
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	53.08	54.26
Zm00001d025073_P001	Maize	cytosol	19.91	54.12
CDX71410	Canola	nucleus	48.72	53.99
CDY04517	Canola	plastid	48.34	53.29
Bra011993.1-P	Field mustard	plastid	48.53	53.0
Zm00001d025691_P001	Maize	mitochondrion	9.76	52.82
Zm00001d036886_P001	Maize	plastid	11.28	52.65
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	42.46	52.64
KRH25139	Soybean	plastid	47.68	52.34
Zm00001d025331_P002	Maize	cytosol	27.2	51.99
Zm00001d013063_P001	Maize	nucleus	49.67	51.88
Zm00001d036917_P009	Maize	nucleus	47.3	51.66
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	48.53	51.35
KRH30536	Soybean	plastid	42.84	50.79
Zm00001d009158_P003	Maize	golgi	20.76	50.11
Zm00001d007786_P001	Maize	nucleus	48.91	50.0
Zm00001d046438_P003	Maize	cytosol	47.11	49.45
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	47.58	48.98
Solyc06g074730.2.1	Tomato	nucleus	46.82	48.86
Zm00001d044183_P001	Maize	cytosol	8.25	48.07
GSMUA_Achr4P17670_001	Banana	extracellular, plasma membrane	16.21	47.63
Zm00001d002650_P003	Maize	nucleus	50.62	47.42
Zm00001d011096_P059	Maize	nucleus	49.38	47.02
Zm00001d026111_P014	Maize	nucleus	48.53	46.76
Zm00001d037833_P001	Maize	mitochondrion	10.9	46.37
GSMUA_Achr6P04510_001	Banana	nucleus	54.22	46.24
Zm00001d014875_P001	Maize	nucleus	46.73	45.69
Zm00001d035747_P027	Maize	endoplasmic reticulum, plastid	49.67	45.6
Zm00001d021345_P001	Maize	nucleus	37.82	42.95
Zm00001d006351_P001	Maize	nucleus	40.95	41.03
Zm00001d039440_P001	Maize	cytosol	8.53	36.89
Zm00001d033206_P001	Maize	cytosol	33.27	36.34
Zm00001d040429_P012	Maize	nucleus	29.57	34.63
Zm00001d002316_P003	Maize	plastid	28.06	34.58
Zm00001d008249_P012	Maize	nucleus	29.19	34.22
Zm00001d026300_P001	Maize	nucleus	28.44	34.05
Zm00001d019905_P003	Maize	nucleus	29.38	33.66
Zm00001d039214_P025	Maize	nucleus	28.82	32.9
Zm00001d029573_P001	Maize	cytosol	32.13	32.85
Zm00001d035554_P001	Maize	plastid	13.74	28.83

Protein Annotations

EntrezGene:100384259	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	UniProt:A0A1D6GKG3
ProteinID:AQK63825.1	InterPro:ArgoL1	InterPro:ArgoL2	InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0031047	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf
PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488
PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF49	InterPro:Piwi	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098
UniParc:UPI0004DEC713	EnsemblPlantsGene:Zm00001d013542	EnsemblPlants:Zm00001d013542_P003	EnsemblPlants:Zm00001d013542_T003	SEG:seg	:

Description

argonaute108 argonaute108

Coordinates

chr5:+:13953891..13960814

Molecular Weight (calculated)

116215.0 Da

IEP (calculated)

9.498

GRAVY (calculated)

-0.433

Length

1055 amino acids

Sequence
(BLAST)

0001: MSTRDGGGGR RGGNAAAGRG GDGQGRGRGG GGRGGAGGRG GGGQWRAQGG AELGGGRGGA VGAARGGRGG VERGGHQSFH GARPVGGDRG GRGHYHHGVP
0101: AQVQPQWQVA APPSTSRPTP AEVEELRGEV ERKAAVAVPD AEAHEGPSSG TAHEPSAAPA RVEAEQGTSL VVEADQAAQG RLPPSSSKAL VFPARPGYGT
0201: LGRRCRVRAN HFFVQVADKE IYHYDVVISP ESQSRKRNRW ILNELVKLHK NYLNGRLPVY DGRKGLFTAG PLPFKTKEFV LELTNPERAN QGAKEYSVTI
0301: KDAAKLDLYS LRQFLAGRQR ELPQDTVQAL DIAMRECPTE KYVSISRSFF SQSFGHGGDI GSGVECWRGY YQSLRATQMG LSLNIDISAT AFYKAQPILE
0401: FALEYLNIRD TSRRLSDQDR LKLKKVLKGV RVVATHRRDI AIHYKITGIT SLPLNSLTFN QDGASVSVVQ YFKHQYNYSL KHIHWPCLQS GNDSRPTYLP
0501: MEVCSILGGQ RYSRKLNEYQ VTSILKKACE RPPQREGSIL EVVNRNDYGN DHCAKEFGIK VTNELALVDA RVLPAPTLKY HDSGREKVCS PSVGQWNMNN
0601: KRLIDGVSIQ YWACVTFASR LHPNDVRMFC NNLVGACNDM GMQINGRPCV DVGQARPDNL EAALRNTHRQ SAQMLAQQGV TRQLDLLIVV LPDANASVFY
0701: GRIKRLCETE LGLVTQCCQP KNVFKGGRQY LQNLALKINV KVGGRNTVLE DALNRRIHLL TDLPTIIFGA DVTHPAPGED ASPSIAAVVA SMDWPQVAKY
0801: RCLVSSQGHR EEIITDLFTQ VKDPQKGLIN GGMIRHAEHL RELLVSFYKA NGSRKPSRII FYRDGVSEGQ FSQVLLYEVD AIRKACASLE EGYLPPITFI
0901: VVQKRHHTRL FPEDHHAHGQ MDRSGNILPG TVVDTKICHP SEFDFYLCSH SGIQGTSRPA HYHVLFDENK FTADALQTLT YKLCYTYARC TRSVSIVPPA
1001: YYAHLAAFRA RHYMDDDLSD QGSSSVASSR MKDGAVPVKQ LPKVMESVKQ FMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.